Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13770

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13765 and BWI76_RS13770 are separated by 5 nucleotidesBWI76_RS13770 and BWI76_RS13775 are separated by 9 nucleotidesBWI76_RS13775 and BWI76_RS13780 overlap by 4 nucleotides BWI76_RS13765: BWI76_RS13765 - MFS transporter AraJ, at 2,869,840 to 2,870,991 _RS13765 BWI76_RS13770: BWI76_RS13770 - alkylhydroperoxidase domain protein, at 2,870,997 to 2,872,088 _RS13770 BWI76_RS13775: BWI76_RS13775 - putative FMN-dependent luciferase-like monooxygenase, at 2,872,098 to 2,873,087 _RS13775 BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688 _RS13780 Position (kb) 2870 2871 2872 2873Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2870.009 kb on + strand, within BWI76_RS13765at 2870.014 kb on + strand, within BWI76_RS13765at 2870.101 kb on + strand, within BWI76_RS13765at 2870.288 kb on - strand, within BWI76_RS13765at 2870.288 kb on - strand, within BWI76_RS13765at 2870.342 kb on - strand, within BWI76_RS13765at 2870.347 kb on + strand, within BWI76_RS13765at 2870.352 kb on + strand, within BWI76_RS13765at 2870.355 kb on - strand, within BWI76_RS13765at 2870.355 kb on - strand, within BWI76_RS13765at 2870.472 kb on - strand, within BWI76_RS13765at 2870.501 kb on + strand, within BWI76_RS13765at 2870.501 kb on - strand, within BWI76_RS13765at 2870.700 kb on + strand, within BWI76_RS13765at 2870.700 kb on + strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.708 kb on - strand, within BWI76_RS13765at 2870.743 kb on + strand, within BWI76_RS13765at 2870.765 kb on - strand, within BWI76_RS13765at 2870.806 kb on + strand, within BWI76_RS13765at 2870.906 kb on + strandat 2871.274 kb on + strand, within BWI76_RS13770at 2871.753 kb on - strand, within BWI76_RS13770at 2871.838 kb on + strand, within BWI76_RS13770at 2871.993 kb on + strandat 2872.152 kb on + strandat 2872.166 kb on + strandat 2872.272 kb on - strand, within BWI76_RS13775at 2872.532 kb on + strand, within BWI76_RS13775at 2872.598 kb on - strand, within BWI76_RS13775

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,870,009 + BWI76_RS13765 0.15 +2.5
2,870,014 + BWI76_RS13765 0.15 -2.3
2,870,101 + BWI76_RS13765 0.23 -0.7
2,870,288 - BWI76_RS13765 0.39 -1.1
2,870,288 - BWI76_RS13765 0.39 +1.4
2,870,342 - BWI76_RS13765 0.44 +1.3
2,870,347 + BWI76_RS13765 0.44 +0.1
2,870,352 + BWI76_RS13765 0.44 -1.7
2,870,355 - BWI76_RS13765 0.45 -0.5
2,870,355 - BWI76_RS13765 0.45 -3.4
2,870,472 - BWI76_RS13765 0.55 -2.8
2,870,501 + BWI76_RS13765 0.57 -1.9
2,870,501 - BWI76_RS13765 0.57 -1.3
2,870,700 + BWI76_RS13765 0.75 -0.7
2,870,700 + BWI76_RS13765 0.75 +0.8
2,870,708 - BWI76_RS13765 0.75 -0.2
2,870,708 - BWI76_RS13765 0.75 +1.2
2,870,708 - BWI76_RS13765 0.75 +2.2
2,870,743 + BWI76_RS13765 0.78 -0.1
2,870,765 - BWI76_RS13765 0.80 +0.8
2,870,806 + BWI76_RS13765 0.84 -1.6
2,870,906 + -0.6
2,871,274 + BWI76_RS13770 0.25 -0.9
2,871,753 - BWI76_RS13770 0.69 -0.1
2,871,838 + BWI76_RS13770 0.77 -2.8
2,871,993 + -2.4
2,872,152 + -1.7
2,872,166 + +1.2
2,872,272 - BWI76_RS13775 0.18 -2.0
2,872,532 + BWI76_RS13775 0.44 -1.4
2,872,598 - BWI76_RS13775 0.51 -1.0

Or see this region's nucleotide sequence