Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13335

Experiment: K. M5a1 KLEB23 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS13325 and BWI76_RS13330 are separated by 2 nucleotidesBWI76_RS13330 and BWI76_RS13335 overlap by 4 nucleotidesBWI76_RS13335 and BWI76_RS13340 are separated by 113 nucleotides BWI76_RS13325: BWI76_RS13325 - dicarboxylate transporter/tellurite-resistance protein TehA, at 2,779,061 to 2,780,059 _RS13325 BWI76_RS13330: BWI76_RS13330 - tellurite resistance methyltransferase TehB, at 2,780,062 to 2,780,658 _RS13330 BWI76_RS13335: BWI76_RS13335 - peptidase T, at 2,780,655 to 2,781,884 _RS13335 BWI76_RS13340: BWI76_RS13340 - peptide ABC transporter substrate-binding protein, at 2,781,998 to 2,783,590 _RS13340 Position (kb) 2780 2781 2782Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2780.143 kb on - strand, within BWI76_RS13330at 2780.843 kb on + strand, within BWI76_RS13335at 2780.999 kb on - strand, within BWI76_RS13335at 2781.008 kb on + strand, within BWI76_RS13335at 2781.340 kb on - strand, within BWI76_RS13335at 2781.475 kb on - strand, within BWI76_RS13335at 2781.532 kb on - strand, within BWI76_RS13335at 2781.578 kb on - strand, within BWI76_RS13335at 2781.629 kb on - strand, within BWI76_RS13335at 2781.867 kb on + strandat 2781.884 kb on + strandat 2781.892 kb on - strandat 2782.016 kb on - strandat 2782.125 kb on - strandat 2782.126 kb on - strandat 2782.128 kb on - strandat 2782.137 kb on + strandat 2782.144 kb on + strandat 2782.144 kb on + strandat 2782.145 kb on - strandat 2782.145 kb on - strandat 2782.160 kb on + strand, within BWI76_RS13340at 2782.194 kb on + strand, within BWI76_RS13340at 2782.202 kb on - strand, within BWI76_RS13340at 2782.202 kb on - strand, within BWI76_RS13340at 2782.210 kb on - strand, within BWI76_RS13340at 2782.372 kb on + strand, within BWI76_RS13340at 2782.469 kb on - strand, within BWI76_RS13340at 2782.486 kb on - strand, within BWI76_RS13340at 2782.492 kb on - strand, within BWI76_RS13340at 2782.524 kb on - strand, within BWI76_RS13340at 2782.564 kb on + strand, within BWI76_RS13340at 2782.572 kb on - strand, within BWI76_RS13340at 2782.608 kb on + strand, within BWI76_RS13340at 2782.611 kb on - strand, within BWI76_RS13340at 2782.611 kb on - strand, within BWI76_RS13340at 2782.681 kb on - strand, within BWI76_RS13340at 2782.731 kb on + strand, within BWI76_RS13340at 2782.819 kb on - strand, within BWI76_RS13340at 2782.839 kb on - strand, within BWI76_RS13340

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
remove
2,780,143 - BWI76_RS13330 0.14 +0.3
2,780,843 + BWI76_RS13335 0.15 -0.5
2,780,999 - BWI76_RS13335 0.28 +0.3
2,781,008 + BWI76_RS13335 0.29 -2.5
2,781,340 - BWI76_RS13335 0.56 -0.8
2,781,475 - BWI76_RS13335 0.67 -1.8
2,781,532 - BWI76_RS13335 0.71 -1.9
2,781,578 - BWI76_RS13335 0.75 -2.0
2,781,629 - BWI76_RS13335 0.79 -1.4
2,781,867 + -1.9
2,781,884 + +1.3
2,781,892 - +0.7
2,782,016 - -2.0
2,782,125 - -3.0
2,782,126 - -0.8
2,782,128 - +1.3
2,782,137 + -0.5
2,782,144 + -0.9
2,782,144 + -3.4
2,782,145 - -2.4
2,782,145 - +0.9
2,782,160 + BWI76_RS13340 0.10 -1.2
2,782,194 + BWI76_RS13340 0.12 +2.6
2,782,202 - BWI76_RS13340 0.13 -1.7
2,782,202 - BWI76_RS13340 0.13 +1.5
2,782,210 - BWI76_RS13340 0.13 +1.5
2,782,372 + BWI76_RS13340 0.23 -2.9
2,782,469 - BWI76_RS13340 0.30 -0.3
2,782,486 - BWI76_RS13340 0.31 +1.9
2,782,492 - BWI76_RS13340 0.31 -1.5
2,782,524 - BWI76_RS13340 0.33 +2.1
2,782,564 + BWI76_RS13340 0.36 +0.3
2,782,572 - BWI76_RS13340 0.36 -1.6
2,782,608 + BWI76_RS13340 0.38 -1.8
2,782,611 - BWI76_RS13340 0.38 -0.9
2,782,611 - BWI76_RS13340 0.38 -2.0
2,782,681 - BWI76_RS13340 0.43 +0.3
2,782,731 + BWI76_RS13340 0.46 +0.6
2,782,819 - BWI76_RS13340 0.52 +2.1
2,782,839 - BWI76_RS13340 0.53 -1.4

Or see this region's nucleotide sequence