Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12815

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12800 and BWI76_RS12805 overlap by 1 nucleotidesBWI76_RS12805 and BWI76_RS12810 are separated by 7 nucleotidesBWI76_RS12810 and BWI76_RS12815 are separated by 0 nucleotidesBWI76_RS12815 and BWI76_RS12820 are separated by 235 nucleotides BWI76_RS12800: BWI76_RS12800 - hypothetical protein, at 2,666,957 to 2,669,596 _RS12800 BWI76_RS12805: BWI76_RS12805 - YnbE family lipoprotein, at 2,669,596 to 2,669,781 _RS12805 BWI76_RS12810: BWI76_RS12810 - hypothetical protein, at 2,669,789 to 2,670,112 _RS12810 BWI76_RS12815: BWI76_RS12815 - transcriptional regulator FeaR, at 2,670,113 to 2,671,021 _RS12815 BWI76_RS12820: BWI76_RS12820 - NAD-dependent phenylacetaldehyde dehydrogenase, at 2,671,257 to 2,672,756 _RS12820 Position (kb) 2670 2671 2672Strain fitness (log2 ratio) -2 -1 0 1 2at 2669.147 kb on - strand, within BWI76_RS12800at 2669.173 kb on + strand, within BWI76_RS12800at 2669.337 kb on + strandat 2669.345 kb on - strandat 2670.529 kb on + strand, within BWI76_RS12815at 2670.614 kb on + strand, within BWI76_RS12815at 2671.231 kb on - strandat 2671.242 kb on + strandat 2671.441 kb on + strand, within BWI76_RS12820at 2671.485 kb on + strand, within BWI76_RS12820at 2671.493 kb on - strand, within BWI76_RS12820at 2671.581 kb on - strand, within BWI76_RS12820at 2671.609 kb on + strandat 2671.970 kb on - strand, within BWI76_RS12820

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,669,147 - BWI76_RS12800 0.83 -0.4
2,669,173 + BWI76_RS12800 0.84 -0.4
2,669,337 + -1.0
2,669,345 - +0.8
2,670,529 + BWI76_RS12815 0.46 -0.4
2,670,614 + BWI76_RS12815 0.55 -2.6
2,671,231 - +2.3
2,671,242 + +0.7
2,671,441 + BWI76_RS12820 0.12 -2.3
2,671,485 + BWI76_RS12820 0.15 -0.7
2,671,493 - BWI76_RS12820 0.16 -1.3
2,671,581 - BWI76_RS12820 0.22 +0.5
2,671,609 + -0.7
2,671,970 - BWI76_RS12820 0.48 -1.3

Or see this region's nucleotide sequence