Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06815

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06805 and BWI76_RS06810 are separated by 69 nucleotidesBWI76_RS06810 and BWI76_RS06815 are separated by 150 nucleotidesBWI76_RS06815 and BWI76_RS06820 are separated by 91 nucleotides BWI76_RS06805: BWI76_RS06805 - primosomal replication protein N'', at 1,428,322 to 1,428,849 _RS06805 BWI76_RS06810: BWI76_RS06810 - hypothetical protein, at 1,428,919 to 1,429,296 _RS06810 BWI76_RS06815: BWI76_RS06815 - adenine phosphoribosyltransferase, at 1,429,447 to 1,429,998 _RS06815 BWI76_RS06820: BWI76_RS06820 - DNA polymerase III subunit gamma/tau, at 1,430,090 to 1,431,991 _RS06820 Position (kb) 1429 1430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1428.450 kb on - strand, within BWI76_RS06805at 1428.556 kb on - strand, within BWI76_RS06805at 1428.707 kb on + strand, within BWI76_RS06805at 1428.879 kb on + strandat 1428.974 kb on - strand, within BWI76_RS06810at 1429.029 kb on + strand, within BWI76_RS06810at 1429.141 kb on - strand, within BWI76_RS06810at 1429.250 kb on - strand, within BWI76_RS06810at 1429.290 kb on + strandat 1429.367 kb on - strandat 1429.498 kb on + strandat 1429.498 kb on + strandat 1429.506 kb on - strand, within BWI76_RS06815at 1429.585 kb on - strand, within BWI76_RS06815at 1429.696 kb on - strand, within BWI76_RS06815at 1429.891 kb on + strand, within BWI76_RS06815

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,428,450 - BWI76_RS06805 0.24 +0.1
1,428,556 - BWI76_RS06805 0.44 -2.2
1,428,707 + BWI76_RS06805 0.73 -2.6
1,428,879 + -0.2
1,428,974 - BWI76_RS06810 0.15 +0.6
1,429,029 + BWI76_RS06810 0.29 -1.6
1,429,141 - BWI76_RS06810 0.59 +1.9
1,429,250 - BWI76_RS06810 0.88 -0.2
1,429,290 + +1.4
1,429,367 - -2.8
1,429,498 + +0.8
1,429,498 + -0.1
1,429,506 - BWI76_RS06815 0.11 -2.9
1,429,585 - BWI76_RS06815 0.25 +0.1
1,429,696 - BWI76_RS06815 0.45 -4.3
1,429,891 + BWI76_RS06815 0.80 -1.5

Or see this region's nucleotide sequence