Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26675

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26670 and BWI76_RS26675 are separated by 159 nucleotidesBWI76_RS26675 and BWI76_RS26680 are separated by 185 nucleotides BWI76_RS26670: BWI76_RS26670 - two-component sensor histidine kinase, at 5,521,522 to 5,522,883 _RS26670 BWI76_RS26675: BWI76_RS26675 - phosphoesterase PA-phosphatase-like protein, at 5,523,043 to 5,524,314 _RS26675 BWI76_RS26680: BWI76_RS26680 - 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ, at 5,524,500 to 5,525,342 _RS26680 Position (kb) 5523 5524 5525Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5522.084 kb on + strand, within BWI76_RS26670at 5522.150 kb on + strand, within BWI76_RS26670at 5522.177 kb on + strand, within BWI76_RS26670at 5522.219 kb on + strand, within BWI76_RS26670at 5522.269 kb on - strand, within BWI76_RS26670at 5522.349 kb on + strand, within BWI76_RS26670at 5522.357 kb on - strand, within BWI76_RS26670at 5522.400 kb on - strand, within BWI76_RS26670at 5522.421 kb on + strand, within BWI76_RS26670at 5522.422 kb on - strand, within BWI76_RS26670at 5522.439 kb on - strand, within BWI76_RS26670at 5522.564 kb on - strand, within BWI76_RS26670at 5522.660 kb on - strandat 5522.660 kb on - strand, within BWI76_RS26670at 5522.662 kb on + strand, within BWI76_RS26670at 5522.718 kb on - strand, within BWI76_RS26670at 5522.774 kb on - strandat 5523.007 kb on + strandat 5523.088 kb on - strandat 5523.105 kb on - strandat 5523.172 kb on - strand, within BWI76_RS26675at 5523.195 kb on + strand, within BWI76_RS26675at 5523.195 kb on + strand, within BWI76_RS26675at 5523.239 kb on - strand, within BWI76_RS26675at 5523.355 kb on - strand, within BWI76_RS26675at 5523.408 kb on + strand, within BWI76_RS26675at 5523.526 kb on + strand, within BWI76_RS26675at 5523.608 kb on + strand, within BWI76_RS26675at 5523.647 kb on + strand, within BWI76_RS26675at 5523.647 kb on + strand, within BWI76_RS26675at 5523.647 kb on + strand, within BWI76_RS26675at 5523.652 kb on + strand, within BWI76_RS26675at 5523.655 kb on - strand, within BWI76_RS26675at 5523.655 kb on - strand, within BWI76_RS26675at 5523.698 kb on + strand, within BWI76_RS26675at 5523.698 kb on + strand, within BWI76_RS26675at 5523.706 kb on - strand, within BWI76_RS26675at 5523.762 kb on + strand, within BWI76_RS26675at 5523.820 kb on + strand, within BWI76_RS26675at 5523.828 kb on - strand, within BWI76_RS26675at 5523.916 kb on + strand, within BWI76_RS26675at 5523.921 kb on - strand, within BWI76_RS26675at 5523.997 kb on + strand, within BWI76_RS26675at 5524.214 kb on + strandat 5524.397 kb on - strandat 5524.432 kb on + strandat 5524.442 kb on + strandat 5524.445 kb on - strandat 5524.512 kb on + strandat 5524.515 kb on - strandat 5524.538 kb on - strandat 5524.586 kb on - strand, within BWI76_RS26680at 5524.633 kb on - strand, within BWI76_RS26680at 5524.719 kb on - strand, within BWI76_RS26680at 5524.760 kb on + strand, within BWI76_RS26680at 5524.784 kb on + strand, within BWI76_RS26680at 5524.827 kb on + strand, within BWI76_RS26680at 5524.889 kb on + strand, within BWI76_RS26680at 5524.938 kb on - strand, within BWI76_RS26680at 5524.953 kb on - strand, within BWI76_RS26680

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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5,522,084 + BWI76_RS26670 0.41 +2.8
5,522,150 + BWI76_RS26670 0.46 +1.8
5,522,177 + BWI76_RS26670 0.48 +1.6
5,522,219 + BWI76_RS26670 0.51 +1.6
5,522,269 - BWI76_RS26670 0.55 +2.7
5,522,349 + BWI76_RS26670 0.61 +0.3
5,522,357 - BWI76_RS26670 0.61 +2.2
5,522,400 - BWI76_RS26670 0.64 +1.0
5,522,421 + BWI76_RS26670 0.66 +1.7
5,522,422 - BWI76_RS26670 0.66 -3.3
5,522,439 - BWI76_RS26670 0.67 +2.8
5,522,564 - BWI76_RS26670 0.77 +1.5
5,522,660 - -0.5
5,522,660 - BWI76_RS26670 0.84 +0.7
5,522,662 + BWI76_RS26670 0.84 +2.5
5,522,718 - BWI76_RS26670 0.88 +0.6
5,522,774 - +3.0
5,523,007 + -0.1
5,523,088 - +0.6
5,523,105 - +0.1
5,523,172 - BWI76_RS26675 0.10 -0.9
5,523,195 + BWI76_RS26675 0.12 +0.3
5,523,195 + BWI76_RS26675 0.12 -0.1
5,523,239 - BWI76_RS26675 0.15 -0.2
5,523,355 - BWI76_RS26675 0.25 -1.7
5,523,408 + BWI76_RS26675 0.29 -2.4
5,523,526 + BWI76_RS26675 0.38 -0.2
5,523,608 + BWI76_RS26675 0.44 -0.5
5,523,647 + BWI76_RS26675 0.47 -0.2
5,523,647 + BWI76_RS26675 0.47 -2.0
5,523,647 + BWI76_RS26675 0.47 -0.3
5,523,652 + BWI76_RS26675 0.48 -3.5
5,523,655 - BWI76_RS26675 0.48 -0.2
5,523,655 - BWI76_RS26675 0.48 +0.1
5,523,698 + BWI76_RS26675 0.51 +0.3
5,523,698 + BWI76_RS26675 0.51 -0.9
5,523,706 - BWI76_RS26675 0.52 -2.5
5,523,762 + BWI76_RS26675 0.57 +0.3
5,523,820 + BWI76_RS26675 0.61 -0.5
5,523,828 - BWI76_RS26675 0.62 +1.3
5,523,916 + BWI76_RS26675 0.69 -2.1
5,523,921 - BWI76_RS26675 0.69 -0.2
5,523,997 + BWI76_RS26675 0.75 -0.2
5,524,214 + +0.5
5,524,397 - -0.1
5,524,432 + -0.9
5,524,442 + +0.3
5,524,445 - +1.5
5,524,512 + -1.9
5,524,515 - -0.1
5,524,538 - -3.0
5,524,586 - BWI76_RS26680 0.10 +0.4
5,524,633 - BWI76_RS26680 0.16 +0.3
5,524,719 - BWI76_RS26680 0.26 +0.2
5,524,760 + BWI76_RS26680 0.31 +0.4
5,524,784 + BWI76_RS26680 0.34 +2.1
5,524,827 + BWI76_RS26680 0.39 +1.7
5,524,889 + BWI76_RS26680 0.46 +0.1
5,524,938 - BWI76_RS26680 0.52 -0.3
5,524,953 - BWI76_RS26680 0.54 -2.4

Or see this region's nucleotide sequence