Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24770

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24755 and BWI76_RS24760 are separated by 46 nucleotidesBWI76_RS24760 and BWI76_RS24765 are separated by 2 nucleotidesBWI76_RS24765 and BWI76_RS24770 overlap by 4 nucleotidesBWI76_RS24770 and BWI76_RS24775 are separated by 323 nucleotidesBWI76_RS24775 and BWI76_RS24780 are separated by 74 nucleotides BWI76_RS24755: BWI76_RS24755 - hypothetical protein, at 5,163,143 to 5,163,511 _RS24755 BWI76_RS24760: BWI76_RS24760 - membrane protein, at 5,163,558 to 5,163,863 _RS24760 BWI76_RS24765: BWI76_RS24765 - membrane protein, at 5,163,866 to 5,164,264 _RS24765 BWI76_RS24770: BWI76_RS24770 - hypothetical protein, at 5,164,261 to 5,164,560 _RS24770 BWI76_RS24775: BWI76_RS24775 - hypothetical protein, at 5,164,884 to 5,165,276 _RS24775 BWI76_RS24780: BWI76_RS24780 - glutathione-dependent reductase, at 5,165,351 to 5,166,337 _RS24780 Position (kb) 5164 5165Strain fitness (log2 ratio) -3 -2 -1 0 1at 5163.419 kb on - strand, within BWI76_RS24755at 5163.489 kb on + strandat 5163.523 kb on + strandat 5163.917 kb on + strand, within BWI76_RS24765at 5163.920 kb on - strand, within BWI76_RS24765at 5163.927 kb on + strand, within BWI76_RS24765at 5164.366 kb on - strand, within BWI76_RS24770at 5164.387 kb on + strand, within BWI76_RS24770at 5164.514 kb on - strand, within BWI76_RS24770at 5164.579 kb on + strandat 5164.582 kb on - strandat 5164.685 kb on + strandat 5164.785 kb on - strandat 5164.859 kb on + strandat 5164.940 kb on + strand, within BWI76_RS24775at 5165.116 kb on + strand, within BWI76_RS24775at 5165.124 kb on - strand, within BWI76_RS24775at 5165.227 kb on - strand, within BWI76_RS24775at 5165.279 kb on + strandat 5165.311 kb on + strandat 5165.493 kb on - strand, within BWI76_RS24780at 5165.516 kb on + strand, within BWI76_RS24780at 5165.538 kb on + strand, within BWI76_RS24780

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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5,163,419 - BWI76_RS24755 0.75 +0.9
5,163,489 + -0.2
5,163,523 + +1.4
5,163,917 + BWI76_RS24765 0.13 -0.5
5,163,920 - BWI76_RS24765 0.14 +0.7
5,163,927 + BWI76_RS24765 0.15 -0.6
5,164,366 - BWI76_RS24770 0.35 -0.6
5,164,387 + BWI76_RS24770 0.42 -0.8
5,164,514 - BWI76_RS24770 0.84 -3.1
5,164,579 + +0.3
5,164,582 - -1.7
5,164,685 + +0.6
5,164,785 - +0.0
5,164,859 + +0.1
5,164,940 + BWI76_RS24775 0.14 -1.6
5,165,116 + BWI76_RS24775 0.59 +0.2
5,165,124 - BWI76_RS24775 0.61 +0.2
5,165,227 - BWI76_RS24775 0.87 +0.0
5,165,279 + -0.7
5,165,311 + -1.5
5,165,493 - BWI76_RS24780 0.14 -0.5
5,165,516 + BWI76_RS24780 0.17 -0.6
5,165,538 + BWI76_RS24780 0.19 +0.4

Or see this region's nucleotide sequence