Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS24715

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS24710 and BWI76_RS24715 are separated by 254 nucleotidesBWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotidesBWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotides BWI76_RS24710: BWI76_RS24710 - membrane protein, at 5,152,864 to 5,153,832 _RS24710 BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334 _RS24715 BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904 _RS24720 BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486 _RS24725 Position (kb) 5154 5155 5156Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 5153.196 kb on - strand, within BWI76_RS24710at 5153.460 kb on + strand, within BWI76_RS24710at 5153.461 kb on + strand, within BWI76_RS24710at 5153.521 kb on + strand, within BWI76_RS24710at 5153.587 kb on - strand, within BWI76_RS24710at 5153.653 kb on + strand, within BWI76_RS24710at 5153.769 kb on - strandat 5153.778 kb on + strandat 5153.778 kb on + strandat 5153.778 kb on + strandat 5153.841 kb on - strandat 5153.841 kb on - strandat 5153.855 kb on - strandat 5153.966 kb on - strandat 5153.975 kb on - strandat 5154.031 kb on - strandat 5154.063 kb on + strandat 5154.086 kb on - strandat 5154.086 kb on - strandat 5154.129 kb on + strandat 5154.137 kb on - strandat 5154.304 kb on + strand, within BWI76_RS24715at 5154.824 kb on + strand, within BWI76_RS24715at 5154.837 kb on + strand, within BWI76_RS24715at 5155.006 kb on + strand, within BWI76_RS24715at 5155.365 kb on + strandat 5155.632 kb on - strand, within BWI76_RS24720at 5155.811 kb on + strand, within BWI76_RS24720at 5155.886 kb on - strandat 5156.052 kb on + strandat 5156.054 kb on + strandat 5156.054 kb on + strandat 5156.088 kb on - strandat 5156.090 kb on - strandat 5156.278 kb on + strand, within BWI76_RS24725at 5156.298 kb on - strand, within BWI76_RS24725at 5156.325 kb on + strand, within BWI76_RS24725

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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5,153,196 - BWI76_RS24710 0.34 -0.8
5,153,460 + BWI76_RS24710 0.62 +0.3
5,153,461 + BWI76_RS24710 0.62 +0.1
5,153,521 + BWI76_RS24710 0.68 -1.2
5,153,587 - BWI76_RS24710 0.75 +0.5
5,153,653 + BWI76_RS24710 0.81 +0.8
5,153,769 - -0.3
5,153,778 + +0.2
5,153,778 + -0.5
5,153,778 + +0.1
5,153,841 - +0.0
5,153,841 - +0.6
5,153,855 - +0.2
5,153,966 - -0.1
5,153,975 - +0.5
5,154,031 - -0.5
5,154,063 + +0.7
5,154,086 - -0.5
5,154,086 - +0.5
5,154,129 + +2.5
5,154,137 - -0.6
5,154,304 + BWI76_RS24715 0.17 -1.7
5,154,824 + BWI76_RS24715 0.59 -0.8
5,154,837 + BWI76_RS24715 0.60 -0.9
5,155,006 + BWI76_RS24715 0.74 -0.8
5,155,365 + +3.1
5,155,632 - BWI76_RS24720 0.51 +0.8
5,155,811 + BWI76_RS24720 0.83 -1.2
5,155,886 - -0.4
5,156,052 + +0.9
5,156,054 + -0.0
5,156,054 + -2.0
5,156,088 - -0.9
5,156,090 - -3.2
5,156,278 + BWI76_RS24725 0.19 -0.2
5,156,298 - BWI76_RS24725 0.20 +1.4
5,156,325 + BWI76_RS24725 0.22 +0.4

Or see this region's nucleotide sequence