Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS24710 and BWI76_RS24715 are separated by 254 nucleotides BWI76_RS24715 and BWI76_RS24720 are separated by 15 nucleotides BWI76_RS24720 and BWI76_RS24725 are separated by 94 nucleotides
BWI76_RS24710: BWI76_RS24710 - membrane protein, at 5,152,864 to 5,153,832
_RS24710
BWI76_RS24715: BWI76_RS24715 - serine/threonine transporter SstT, at 5,154,087 to 5,155,334
_RS24715
BWI76_RS24720: BWI76_RS24720 - hypothetical protein, at 5,155,350 to 5,155,904
_RS24720
BWI76_RS24725: BWI76_RS24725 - altronate hydrolase, at 5,155,999 to 5,157,486
_RS24725
Position (kb)
5154
5155
5156 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 5153.196 kb on - strand, within BWI76_RS24710 at 5153.460 kb on + strand, within BWI76_RS24710 at 5153.461 kb on + strand, within BWI76_RS24710 at 5153.521 kb on + strand, within BWI76_RS24710 at 5153.587 kb on - strand, within BWI76_RS24710 at 5153.653 kb on + strand, within BWI76_RS24710 at 5153.769 kb on - strand at 5153.778 kb on + strand at 5153.778 kb on + strand at 5153.778 kb on + strand at 5153.841 kb on - strand at 5153.841 kb on - strand at 5153.855 kb on - strand at 5153.966 kb on - strand at 5153.975 kb on - strand at 5154.031 kb on - strand at 5154.063 kb on + strand at 5154.086 kb on - strand at 5154.086 kb on - strand at 5154.129 kb on + strand at 5154.137 kb on - strand at 5154.304 kb on + strand, within BWI76_RS24715 at 5154.824 kb on + strand, within BWI76_RS24715 at 5154.837 kb on + strand, within BWI76_RS24715 at 5155.006 kb on + strand, within BWI76_RS24715 at 5155.365 kb on + strand at 5155.632 kb on - strand, within BWI76_RS24720 at 5155.811 kb on + strand, within BWI76_RS24720 at 5155.886 kb on - strand at 5156.052 kb on + strand at 5156.054 kb on + strand at 5156.054 kb on + strand at 5156.088 kb on - strand at 5156.090 kb on - strand at 5156.278 kb on + strand, within BWI76_RS24725 at 5156.298 kb on - strand, within BWI76_RS24725 at 5156.325 kb on + strand, within BWI76_RS24725
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 5,153,196 - BWI76_RS24710 0.34 -0.8 5,153,460 + BWI76_RS24710 0.62 +0.3 5,153,461 + BWI76_RS24710 0.62 +0.1 5,153,521 + BWI76_RS24710 0.68 -1.2 5,153,587 - BWI76_RS24710 0.75 +0.5 5,153,653 + BWI76_RS24710 0.81 +0.8 5,153,769 - -0.3 5,153,778 + +0.2 5,153,778 + -0.5 5,153,778 + +0.1 5,153,841 - +0.0 5,153,841 - +0.6 5,153,855 - +0.2 5,153,966 - -0.1 5,153,975 - +0.5 5,154,031 - -0.5 5,154,063 + +0.7 5,154,086 - -0.5 5,154,086 - +0.5 5,154,129 + +2.5 5,154,137 - -0.6 5,154,304 + BWI76_RS24715 0.17 -1.7 5,154,824 + BWI76_RS24715 0.59 -0.8 5,154,837 + BWI76_RS24715 0.60 -0.9 5,155,006 + BWI76_RS24715 0.74 -0.8 5,155,365 + +3.1 5,155,632 - BWI76_RS24720 0.51 +0.8 5,155,811 + BWI76_RS24720 0.83 -1.2 5,155,886 - -0.4 5,156,052 + +0.9 5,156,054 + -0.0 5,156,054 + -2.0 5,156,088 - -0.9 5,156,090 - -3.2 5,156,278 + BWI76_RS24725 0.19 -0.2 5,156,298 - BWI76_RS24725 0.20 +1.4 5,156,325 + BWI76_RS24725 0.22 +0.4
Or see this region's nucleotide sequence