Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS19000

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS19000 and BWI76_RS19005 are separated by 225 nucleotides BWI76_RS19000: BWI76_RS19000 - acyltransferase, at 3,943,705 to 3,944,826 _RS19000 BWI76_RS19005: BWI76_RS19005 - capsular polysaccharide biosynthesis protein, at 3,945,052 to 3,946,038 _RS19005 Position (kb) 3943 3944 3945Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4 5 6at 3942.786 kb on - strandat 3942.789 kb on - strandat 3942.791 kb on - strandat 3942.833 kb on - strandat 3942.857 kb on - strandat 3942.857 kb on - strandat 3942.908 kb on + strandat 3942.910 kb on - strandat 3942.916 kb on - strandat 3942.947 kb on - strandat 3942.966 kb on + strandat 3942.984 kb on - strandat 3942.989 kb on - strandat 3943.047 kb on - strandat 3943.066 kb on - strandat 3943.075 kb on - strandat 3943.088 kb on + strandat 3943.091 kb on - strandat 3943.115 kb on - strandat 3943.139 kb on - strandat 3943.190 kb on - strandat 3943.203 kb on + strandat 3943.211 kb on - strandat 3943.406 kb on - strandat 3943.429 kb on - strandat 3943.433 kb on - strandat 3943.443 kb on - strandat 3943.453 kb on - strandat 3943.453 kb on - strandat 3943.453 kb on - strandat 3943.453 kb on - strandat 3943.526 kb on + strandat 3943.526 kb on + strandat 3943.529 kb on - strandat 3943.534 kb on - strandat 3943.534 kb on - strandat 3943.536 kb on + strandat 3943.536 kb on + strandat 3943.544 kb on - strandat 3943.544 kb on - strandat 3943.565 kb on + strandat 3943.582 kb on + strandat 3943.582 kb on + strandat 3943.582 kb on + strandat 3943.582 kb on + strandat 3943.584 kb on + strandat 3943.584 kb on + strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.590 kb on - strandat 3943.689 kb on - strandat 3943.744 kb on + strandat 3943.744 kb on + strandat 3943.746 kb on + strandat 3943.780 kb on + strandat 3943.798 kb on - strandat 3944.032 kb on - strand, within BWI76_RS19000at 3944.047 kb on - strand, within BWI76_RS19000at 3944.068 kb on + strand, within BWI76_RS19000at 3944.089 kb on - strand, within BWI76_RS19000at 3944.168 kb on - strand, within BWI76_RS19000at 3944.626 kb on - strand, within BWI76_RS19000at 3944.692 kb on + strand, within BWI76_RS19000at 3944.695 kb on - strand, within BWI76_RS19000at 3944.699 kb on + strand, within BWI76_RS19000at 3944.748 kb on - strandat 3944.764 kb on - strandat 3944.839 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.847 kb on - strandat 3944.891 kb on - strandat 3945.088 kb on - strandat 3945.299 kb on - strand, within BWI76_RS19005at 3945.372 kb on - strand, within BWI76_RS19005

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,942,786 - +0.3
3,942,789 - -4.0
3,942,791 - -1.9
3,942,833 - -0.4
3,942,857 - -0.2
3,942,857 - -1.7
3,942,908 + +0.4
3,942,910 - -2.9
3,942,916 - +1.3
3,942,947 - +2.3
3,942,966 + -0.1
3,942,984 - +0.4
3,942,989 - -1.3
3,943,047 - -0.0
3,943,066 - -1.1
3,943,075 - -1.8
3,943,088 + -0.1
3,943,091 - -0.3
3,943,115 - +0.1
3,943,139 - -0.5
3,943,190 - +0.7
3,943,203 + -0.3
3,943,211 - -1.0
3,943,406 - -0.4
3,943,429 - -1.3
3,943,433 - -2.0
3,943,443 - -1.6
3,943,453 - +1.1
3,943,453 - -0.4
3,943,453 - -0.4
3,943,453 - -0.1
3,943,526 + +0.6
3,943,526 + +1.3
3,943,529 - -0.5
3,943,534 - +0.3
3,943,534 - -0.1
3,943,536 + +1.1
3,943,536 + +0.3
3,943,544 - -0.1
3,943,544 - -1.6
3,943,565 + +1.9
3,943,582 + -1.1
3,943,582 + +0.3
3,943,582 + +0.9
3,943,582 + -0.1
3,943,584 + +2.9
3,943,584 + +1.3
3,943,590 - -0.1
3,943,590 - -0.1
3,943,590 - -1.3
3,943,590 - -0.1
3,943,590 - -1.1
3,943,590 - +0.3
3,943,590 - +0.4
3,943,689 - +2.4
3,943,744 + +3.5
3,943,744 + +6.6
3,943,746 + +2.8
3,943,780 + +4.7
3,943,798 - +2.9
3,944,032 - BWI76_RS19000 0.29 +3.4
3,944,047 - BWI76_RS19000 0.30 +5.0
3,944,068 + BWI76_RS19000 0.32 +4.4
3,944,089 - BWI76_RS19000 0.34 +0.9
3,944,168 - BWI76_RS19000 0.41 +0.3
3,944,626 - BWI76_RS19000 0.82 +4.7
3,944,692 + BWI76_RS19000 0.88 +4.3
3,944,695 - BWI76_RS19000 0.88 +4.3
3,944,699 + BWI76_RS19000 0.89 +3.5
3,944,748 - +3.9
3,944,764 - +2.8
3,944,839 - -2.4
3,944,847 - +1.9
3,944,847 - -0.6
3,944,847 - +1.4
3,944,847 - -0.1
3,944,847 - +0.8
3,944,847 - -1.3
3,944,847 - +0.8
3,944,847 - -0.7
3,944,847 - -1.4
3,944,847 - -1.3
3,944,847 - +0.7
3,944,847 - -2.1
3,944,847 - +1.8
3,944,847 - +1.0
3,944,847 - +3.2
3,944,847 - +1.9
3,944,847 - +1.1
3,944,847 - -3.8
3,944,847 - +5.4
3,944,847 - +1.4
3,944,847 - -1.1
3,944,847 - -1.8
3,944,847 - +1.0
3,944,847 - -0.1
3,944,847 - -1.7
3,944,847 - -1.2
3,944,847 - +1.9
3,944,847 - -0.5
3,944,847 - +2.5
3,944,847 - -1.3
3,944,847 - -0.7
3,944,847 - -2.6
3,944,847 - +1.0
3,944,847 - -0.3
3,944,847 - -0.4
3,944,847 - -0.7
3,944,847 - -0.1
3,944,847 - +1.1
3,944,847 - -1.7
3,944,847 - +0.2
3,944,847 - -0.4
3,944,847 - -0.9
3,944,847 - +0.8
3,944,847 - +0.7
3,944,847 - -0.1
3,944,847 - +0.6
3,944,847 - -0.5
3,944,847 - -1.1
3,944,847 - +1.1
3,944,847 - +0.4
3,944,847 - -0.1
3,944,847 - +3.2
3,944,847 - -0.4
3,944,847 - +0.8
3,944,847 - -0.4
3,944,891 - +0.1
3,945,088 - +0.5
3,945,299 - BWI76_RS19005 0.25 +5.1
3,945,372 - BWI76_RS19005 0.32 +0.9

Or see this region's nucleotide sequence