Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18270

Experiment: K. M5a1 KLEB23 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS18265 and BWI76_RS18270 are separated by 46 nucleotidesBWI76_RS18270 and BWI76_RS18275 are separated by 371 nucleotides BWI76_RS18265: BWI76_RS18265 - MFS transporter, at 3,795,745 to 3,797,307 _RS18265 BWI76_RS18270: BWI76_RS18270 - hypothetical protein, at 3,797,354 to 3,797,605 _RS18270 BWI76_RS18275: BWI76_RS18275 - MFS transporter, at 3,797,977 to 3,799,401 _RS18275 Position (kb) 3797 3798Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3796.369 kb on - strand, within BWI76_RS18265at 3796.439 kb on + strand, within BWI76_RS18265at 3796.442 kb on - strand, within BWI76_RS18265at 3796.606 kb on + strand, within BWI76_RS18265at 3796.661 kb on - strand, within BWI76_RS18265at 3796.731 kb on + strand, within BWI76_RS18265at 3796.736 kb on + strand, within BWI76_RS18265at 3796.739 kb on - strand, within BWI76_RS18265at 3796.739 kb on - strand, within BWI76_RS18265at 3796.739 kb on - strand, within BWI76_RS18265at 3796.835 kb on + strand, within BWI76_RS18265at 3797.154 kb on + strandat 3797.431 kb on + strand, within BWI76_RS18270at 3797.761 kb on + strandat 3797.922 kb on + strandat 3797.922 kb on + strandat 3797.925 kb on - strandat 3797.925 kb on - strandat 3797.930 kb on - strandat 3797.949 kb on - strandat 3798.093 kb on - strandat 3798.299 kb on - strand, within BWI76_RS18275at 3798.398 kb on + strand, within BWI76_RS18275at 3798.403 kb on + strandat 3798.411 kb on - strand, within BWI76_RS18275at 3798.562 kb on + strand, within BWI76_RS18275at 3798.570 kb on - strand, within BWI76_RS18275

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
remove
3,796,369 - BWI76_RS18265 0.40 -2.6
3,796,439 + BWI76_RS18265 0.44 -0.1
3,796,442 - BWI76_RS18265 0.45 +0.5
3,796,606 + BWI76_RS18265 0.55 +0.3
3,796,661 - BWI76_RS18265 0.59 -3.8
3,796,731 + BWI76_RS18265 0.63 -0.8
3,796,736 + BWI76_RS18265 0.63 -1.2
3,796,739 - BWI76_RS18265 0.64 +0.5
3,796,739 - BWI76_RS18265 0.64 +0.1
3,796,739 - BWI76_RS18265 0.64 -3.1
3,796,835 + BWI76_RS18265 0.70 -0.4
3,797,154 + -0.4
3,797,431 + BWI76_RS18270 0.31 -1.4
3,797,761 + +0.2
3,797,922 + +0.3
3,797,922 + +2.4
3,797,925 - +0.4
3,797,925 - +0.6
3,797,930 - +1.3
3,797,949 - -0.9
3,798,093 - +1.3
3,798,299 - BWI76_RS18275 0.23 +0.3
3,798,398 + BWI76_RS18275 0.30 -0.8
3,798,403 + -0.4
3,798,411 - BWI76_RS18275 0.30 +0.6
3,798,562 + BWI76_RS18275 0.41 +1.6
3,798,570 - BWI76_RS18275 0.42 -0.7

Or see this region's nucleotide sequence