Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18010 and BWI76_RS18015 overlap by 4 nucleotides BWI76_RS18015 and BWI76_RS18020 are separated by 165 nucleotides BWI76_RS18020 and BWI76_RS18025 are separated by 832 nucleotides
BWI76_RS18010: BWI76_RS18010 - hypothetical protein, at 3,743,370 to 3,743,561
_RS18010
BWI76_RS18015: BWI76_RS18015 - serine/threonine-protein phosphatase, at 3,743,558 to 3,744,211
_RS18015
BWI76_RS18020: BWI76_RS18020 - virulence factor VirK, at 3,744,377 to 3,745,321
_RS18020
BWI76_RS18025: BWI76_RS18025 - spore coat U domain-containing protein, at 3,746,154 to 3,746,705
_RS18025
Position (kb)
3744
3745
3746 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 3743.385 kb on - strand at 3743.659 kb on + strand, within BWI76_RS18015 at 3743.766 kb on - strand, within BWI76_RS18015 at 3743.819 kb on + strand, within BWI76_RS18015 at 3743.829 kb on - strand, within BWI76_RS18015 at 3744.070 kb on - strand, within BWI76_RS18015 at 3744.092 kb on + strand, within BWI76_RS18015 at 3744.103 kb on + strand, within BWI76_RS18015 at 3744.103 kb on + strand, within BWI76_RS18015 at 3744.111 kb on - strand, within BWI76_RS18015 at 3744.111 kb on - strand, within BWI76_RS18015 at 3744.111 kb on - strand, within BWI76_RS18015 at 3744.113 kb on + strand, within BWI76_RS18015 at 3744.132 kb on - strand, within BWI76_RS18015 at 3744.139 kb on - strand, within BWI76_RS18015 at 3744.144 kb on + strand, within BWI76_RS18015 at 3744.157 kb on - strand at 3744.157 kb on - strand at 3744.184 kb on + strand at 3744.192 kb on + strand at 3744.192 kb on + strand at 3744.258 kb on + strand at 3744.259 kb on + strand at 3744.261 kb on + strand at 3744.304 kb on - strand at 3744.316 kb on + strand at 3744.316 kb on + strand at 3744.316 kb on + strand at 3744.324 kb on - strand at 3744.324 kb on - strand at 3744.324 kb on - strand at 3744.324 kb on - strand at 3744.324 kb on - strand at 3744.359 kb on - strand at 3744.384 kb on + strand at 3744.390 kb on - strand at 3744.394 kb on + strand at 3744.395 kb on + strand at 3744.402 kb on - strand at 3744.402 kb on - strand at 3744.403 kb on - strand at 3744.403 kb on - strand at 3744.403 kb on - strand at 3744.410 kb on + strand at 3744.413 kb on - strand at 3744.420 kb on + strand at 3744.428 kb on - strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.442 kb on + strand at 3744.448 kb on - strand at 3744.453 kb on + strand at 3744.453 kb on + strand at 3744.453 kb on + strand at 3744.453 kb on + strand at 3744.453 kb on + strand at 3744.453 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.454 kb on + strand at 3744.459 kb on + strand at 3744.460 kb on - strand at 3744.461 kb on - strand at 3744.461 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.462 kb on - strand at 3744.464 kb on + strand at 3744.464 kb on + strand at 3744.472 kb on - strand, within BWI76_RS18020 at 3744.479 kb on - strand, within BWI76_RS18020 at 3744.533 kb on + strand, within BWI76_RS18020 at 3744.542 kb on + strand, within BWI76_RS18020 at 3744.552 kb on + strand, within BWI76_RS18020 at 3744.552 kb on - strand, within BWI76_RS18020 at 3744.560 kb on - strand, within BWI76_RS18020 at 3744.560 kb on - strand, within BWI76_RS18020 at 3744.579 kb on - strand, within BWI76_RS18020 at 3744.580 kb on + strand, within BWI76_RS18020 at 3744.588 kb on - strand, within BWI76_RS18020 at 3744.596 kb on - strand, within BWI76_RS18020 at 3744.720 kb on - strand, within BWI76_RS18020 at 3744.751 kb on + strand, within BWI76_RS18020 at 3744.751 kb on + strand, within BWI76_RS18020 at 3744.929 kb on + strand, within BWI76_RS18020 at 3744.985 kb on - strand, within BWI76_RS18020 at 3745.122 kb on - strand, within BWI76_RS18020 at 3745.277 kb on - strand at 3745.295 kb on + strand at 3745.324 kb on - strand at 3745.367 kb on - strand at 3745.369 kb on - strand at 3745.487 kb on + strand at 3745.523 kb on + strand at 3745.549 kb on - strand at 3745.554 kb on - strand at 3745.634 kb on + strand at 3745.642 kb on - strand at 3745.711 kb on + strand at 3745.722 kb on + strand at 3745.727 kb on + strand at 3745.727 kb on + strand at 3745.727 kb on + strand at 3745.727 kb on + strand at 3745.735 kb on - strand at 3745.735 kb on - strand at 3745.735 kb on - strand at 3745.735 kb on - strand at 3745.735 kb on - strand at 3745.738 kb on + strand at 3745.741 kb on - strand at 3745.746 kb on + strand at 3745.746 kb on + strand at 3745.746 kb on + strand at 3745.746 kb on + strand at 3745.746 kb on + strand at 3745.746 kb on - strand at 3745.754 kb on - strand at 3745.754 kb on - strand at 3745.767 kb on - strand at 3745.767 kb on - strand at 3745.777 kb on - strand at 3745.786 kb on - strand at 3745.791 kb on - strand at 3745.791 kb on - strand at 3745.791 kb on - strand at 3745.793 kb on + strand at 3745.801 kb on - strand at 3745.811 kb on - strand at 3745.811 kb on - strand at 3745.815 kb on + strand at 3745.815 kb on + strand at 3745.815 kb on + strand at 3745.815 kb on + strand at 3745.823 kb on - strand at 3745.823 kb on - strand at 3745.823 kb on - strand at 3745.823 kb on - strand at 3745.903 kb on + strand at 3745.984 kb on - strand at 3745.989 kb on - strand at 3746.062 kb on - strand at 3746.062 kb on - strand at 3746.093 kb on + strand at 3746.101 kb on - strand at 3746.147 kb on - strand at 3746.159 kb on + strand at 3746.159 kb on + strand at 3746.159 kb on + strand at 3746.179 kb on - strand at 3746.179 kb on - strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.181 kb on + strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.189 kb on - strand at 3746.240 kb on - strand, within BWI76_RS18025 at 3746.247 kb on - strand, within BWI76_RS18025 at 3746.268 kb on + strand, within BWI76_RS18025 at 3746.268 kb on + strand, within BWI76_RS18025
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 3,743,385 - -1.1 3,743,659 + BWI76_RS18015 0.15 -2.8 3,743,766 - BWI76_RS18015 0.32 +0.2 3,743,819 + BWI76_RS18015 0.40 +0.2 3,743,829 - BWI76_RS18015 0.41 -1.3 3,744,070 - BWI76_RS18015 0.78 +0.6 3,744,092 + BWI76_RS18015 0.82 -3.1 3,744,103 + BWI76_RS18015 0.83 -0.1 3,744,103 + BWI76_RS18015 0.83 -3.4 3,744,111 - BWI76_RS18015 0.85 +1.7 3,744,111 - BWI76_RS18015 0.85 +0.5 3,744,111 - BWI76_RS18015 0.85 +0.3 3,744,113 + BWI76_RS18015 0.85 -3.3 3,744,132 - BWI76_RS18015 0.88 +0.9 3,744,139 - BWI76_RS18015 0.89 +0.5 3,744,144 + BWI76_RS18015 0.90 +1.8 3,744,157 - +0.7 3,744,157 - -0.0 3,744,184 + -1.4 3,744,192 + -2.0 3,744,192 + -1.0 3,744,258 + -0.9 3,744,259 + -0.1 3,744,261 + +0.8 3,744,304 - -3.7 3,744,316 + -0.9 3,744,316 + -1.1 3,744,316 + -0.6 3,744,324 - -0.3 3,744,324 - -0.2 3,744,324 - -0.4 3,744,324 - -0.4 3,744,324 - -2.9 3,744,359 - -0.9 3,744,384 + -1.1 3,744,390 - -0.1 3,744,394 + -0.6 3,744,395 + -1.1 3,744,402 - -0.8 3,744,402 - +0.4 3,744,403 - -2.4 3,744,403 - -1.8 3,744,403 - -1.4 3,744,410 + +1.0 3,744,413 - -2.8 3,744,420 + +1.0 3,744,428 - -0.0 3,744,442 + -2.5 3,744,442 + +0.3 3,744,442 + -0.2 3,744,442 + -0.2 3,744,442 + +0.9 3,744,442 + -1.3 3,744,442 + -1.5 3,744,442 + -3.1 3,744,448 - -1.2 3,744,453 + -0.5 3,744,453 + -0.8 3,744,453 + -0.9 3,744,453 + +0.2 3,744,453 + +0.1 3,744,453 + -1.5 3,744,454 + +1.3 3,744,454 + -1.1 3,744,454 + -2.9 3,744,454 + -0.5 3,744,454 + -0.5 3,744,454 + -1.4 3,744,454 + -0.4 3,744,454 + -0.7 3,744,454 + -0.7 3,744,454 + -0.6 3,744,454 + +0.3 3,744,454 + -2.2 3,744,454 + -0.4 3,744,454 + -0.2 3,744,454 + -3.2 3,744,454 + -3.1 3,744,454 + +0.2 3,744,459 + -1.2 3,744,460 - -0.2 3,744,461 - +0.5 3,744,461 - -0.5 3,744,462 - -1.1 3,744,462 - -2.0 3,744,462 - +0.6 3,744,462 - +1.7 3,744,462 - +1.0 3,744,462 - -4.0 3,744,462 - -1.4 3,744,462 - +0.2 3,744,462 - -0.1 3,744,462 - +1.8 3,744,464 + +0.8 3,744,464 + +0.9 3,744,472 - BWI76_RS18020 0.10 -1.6 3,744,479 - BWI76_RS18020 0.11 -2.1 3,744,533 + BWI76_RS18020 0.17 -0.3 3,744,542 + BWI76_RS18020 0.17 -1.5 3,744,552 + BWI76_RS18020 0.19 -0.3 3,744,552 - BWI76_RS18020 0.19 -0.7 3,744,560 - BWI76_RS18020 0.19 -0.7 3,744,560 - BWI76_RS18020 0.19 -2.1 3,744,579 - BWI76_RS18020 0.21 -1.7 3,744,580 + BWI76_RS18020 0.21 -0.7 3,744,588 - BWI76_RS18020 0.22 -2.3 3,744,596 - BWI76_RS18020 0.23 -0.8 3,744,720 - BWI76_RS18020 0.36 +0.2 3,744,751 + BWI76_RS18020 0.40 -1.5 3,744,751 + BWI76_RS18020 0.40 -0.6 3,744,929 + BWI76_RS18020 0.58 -0.1 3,744,985 - BWI76_RS18020 0.64 -1.2 3,745,122 - BWI76_RS18020 0.79 -2.1 3,745,277 - +0.8 3,745,295 + -0.0 3,745,324 - +0.1 3,745,367 - +0.8 3,745,369 - +1.6 3,745,487 + -2.9 3,745,523 + -1.1 3,745,549 - +1.1 3,745,554 - -2.8 3,745,634 + +0.8 3,745,642 - -0.1 3,745,711 + +0.3 3,745,722 + +0.1 3,745,727 + +0.9 3,745,727 + +0.2 3,745,727 + +0.2 3,745,727 + +0.9 3,745,735 - -1.9 3,745,735 - -0.4 3,745,735 - -0.5 3,745,735 - +0.9 3,745,735 - +0.9 3,745,738 + -0.1 3,745,741 - -0.4 3,745,746 + +0.2 3,745,746 + -2.0 3,745,746 + -0.1 3,745,746 + -0.2 3,745,746 + -1.2 3,745,746 - -0.5 3,745,754 - +0.2 3,745,754 - +1.7 3,745,767 - +0.1 3,745,767 - +0.3 3,745,777 - -3.2 3,745,786 - -2.6 3,745,791 - +0.3 3,745,791 - -1.0 3,745,791 - -0.5 3,745,793 + +0.5 3,745,801 - -0.8 3,745,811 - -0.3 3,745,811 - +0.7 3,745,815 + -2.6 3,745,815 + +0.6 3,745,815 + +0.9 3,745,815 + -1.2 3,745,823 - -0.4 3,745,823 - +0.1 3,745,823 - -1.3 3,745,823 - +1.4 3,745,903 + -0.4 3,745,984 - -0.4 3,745,989 - -0.1 3,746,062 - +1.5 3,746,062 - -0.6 3,746,093 + -0.2 3,746,101 - +2.9 3,746,147 - +0.2 3,746,159 + +0.4 3,746,159 + -0.2 3,746,159 + -1.6 3,746,179 - +0.4 3,746,179 - -0.9 3,746,181 + +1.6 3,746,181 + -1.2 3,746,181 + +1.1 3,746,181 + -0.4 3,746,181 + +1.8 3,746,181 + +0.1 3,746,181 + -0.7 3,746,181 + -0.2 3,746,181 + -3.2 3,746,181 + -0.1 3,746,181 + +1.9 3,746,181 + -0.4 3,746,189 - -0.9 3,746,189 - +0.6 3,746,189 - +2.4 3,746,189 - +0.0 3,746,189 - +1.0 3,746,189 - +0.5 3,746,189 - -1.9 3,746,240 - BWI76_RS18025 0.16 -1.5 3,746,247 - BWI76_RS18025 0.17 -0.6 3,746,268 + BWI76_RS18025 0.21 +1.1 3,746,268 + BWI76_RS18025 0.21 -0.8
Or see this region's nucleotide sequence