Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS17890 and BWI76_RS17895 are separated by 60 nucleotides BWI76_RS17895 and BWI76_RS17900 are separated by 12 nucleotides BWI76_RS17900 and BWI76_RS17905 are separated by 53 nucleotides
BWI76_RS17890: BWI76_RS17890 - PTS mannose transporter subunit EIIAB, at 3,721,579 to 3,722,547
_RS17890
BWI76_RS17895: BWI76_RS17895 - PTS mannose/fructose/sorbose transporter subunit IIC, at 3,722,608 to 3,723,408
_RS17895
BWI76_RS17900: BWI76_RS17900 - PTS mannose transporter subunit IID, at 3,723,421 to 3,724,272
_RS17900
BWI76_RS17905: BWI76_RS17905 - hypothetical protein, at 3,724,326 to 3,724,784
_RS17905
Position (kb)
3722
3723
3724 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 3721.700 kb on + strand, within BWI76_RS17890 at 3721.880 kb on + strand, within BWI76_RS17890 at 3722.048 kb on + strand, within BWI76_RS17890 at 3722.346 kb on - strand, within BWI76_RS17890 at 3722.471 kb on + strand at 3722.471 kb on + strand at 3722.477 kb on + strand at 3722.479 kb on - strand at 3722.640 kb on + strand at 3722.711 kb on + strand, within BWI76_RS17895 at 3722.719 kb on - strand, within BWI76_RS17895 at 3722.862 kb on - strand, within BWI76_RS17895 at 3723.115 kb on - strand, within BWI76_RS17895 at 3723.125 kb on - strand at 3723.311 kb on - strand, within BWI76_RS17895 at 3723.339 kb on + strand at 3723.358 kb on + strand at 3723.405 kb on - strand at 3723.491 kb on + strand at 3723.501 kb on + strand at 3723.542 kb on - strand, within BWI76_RS17900 at 3723.671 kb on + strand, within BWI76_RS17900 at 3723.887 kb on - strand, within BWI76_RS17900 at 3723.895 kb on + strand, within BWI76_RS17900 at 3724.101 kb on + strand, within BWI76_RS17900 at 3724.156 kb on + strand, within BWI76_RS17900 at 3724.210 kb on - strand at 3724.277 kb on - strand at 3724.348 kb on - strand at 3724.352 kb on - strand at 3724.383 kb on - strand, within BWI76_RS17905
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 3,721,700 + BWI76_RS17890 0.12 -2.4 3,721,880 + BWI76_RS17890 0.31 +0.4 3,722,048 + BWI76_RS17890 0.48 -0.4 3,722,346 - BWI76_RS17890 0.79 -0.9 3,722,471 + +0.9 3,722,471 + +0.3 3,722,477 + +1.9 3,722,479 - -1.4 3,722,640 + +0.2 3,722,711 + BWI76_RS17895 0.13 -0.6 3,722,719 - BWI76_RS17895 0.14 +0.1 3,722,862 - BWI76_RS17895 0.32 -1.3 3,723,115 - BWI76_RS17895 0.63 -0.9 3,723,125 - -0.6 3,723,311 - BWI76_RS17895 0.88 -1.6 3,723,339 + +1.0 3,723,358 + -0.1 3,723,405 - -0.4 3,723,491 + -0.1 3,723,501 + -0.8 3,723,542 - BWI76_RS17900 0.14 -0.5 3,723,671 + BWI76_RS17900 0.29 -0.1 3,723,887 - BWI76_RS17900 0.55 +1.1 3,723,895 + BWI76_RS17900 0.56 -1.1 3,724,101 + BWI76_RS17900 0.80 +0.2 3,724,156 + BWI76_RS17900 0.86 +0.2 3,724,210 - +0.6 3,724,277 - -0.4 3,724,348 - -1.1 3,724,352 - +0.6 3,724,383 - BWI76_RS17905 0.12 -3.7
Or see this region's nucleotide sequence