Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS17895

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS17890 and BWI76_RS17895 are separated by 60 nucleotidesBWI76_RS17895 and BWI76_RS17900 are separated by 12 nucleotidesBWI76_RS17900 and BWI76_RS17905 are separated by 53 nucleotides BWI76_RS17890: BWI76_RS17890 - PTS mannose transporter subunit EIIAB, at 3,721,579 to 3,722,547 _RS17890 BWI76_RS17895: BWI76_RS17895 - PTS mannose/fructose/sorbose transporter subunit IIC, at 3,722,608 to 3,723,408 _RS17895 BWI76_RS17900: BWI76_RS17900 - PTS mannose transporter subunit IID, at 3,723,421 to 3,724,272 _RS17900 BWI76_RS17905: BWI76_RS17905 - hypothetical protein, at 3,724,326 to 3,724,784 _RS17905 Position (kb) 3722 3723 3724Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3721.700 kb on + strand, within BWI76_RS17890at 3721.880 kb on + strand, within BWI76_RS17890at 3722.048 kb on + strand, within BWI76_RS17890at 3722.346 kb on - strand, within BWI76_RS17890at 3722.471 kb on + strandat 3722.471 kb on + strandat 3722.477 kb on + strandat 3722.479 kb on - strandat 3722.640 kb on + strandat 3722.711 kb on + strand, within BWI76_RS17895at 3722.719 kb on - strand, within BWI76_RS17895at 3722.862 kb on - strand, within BWI76_RS17895at 3723.115 kb on - strand, within BWI76_RS17895at 3723.125 kb on - strandat 3723.311 kb on - strand, within BWI76_RS17895at 3723.339 kb on + strandat 3723.358 kb on + strandat 3723.405 kb on - strandat 3723.491 kb on + strandat 3723.501 kb on + strandat 3723.542 kb on - strand, within BWI76_RS17900at 3723.671 kb on + strand, within BWI76_RS17900at 3723.887 kb on - strand, within BWI76_RS17900at 3723.895 kb on + strand, within BWI76_RS17900at 3724.101 kb on + strand, within BWI76_RS17900at 3724.156 kb on + strand, within BWI76_RS17900at 3724.210 kb on - strandat 3724.277 kb on - strandat 3724.348 kb on - strandat 3724.352 kb on - strandat 3724.383 kb on - strand, within BWI76_RS17905

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,721,700 + BWI76_RS17890 0.12 -2.4
3,721,880 + BWI76_RS17890 0.31 +0.4
3,722,048 + BWI76_RS17890 0.48 -0.4
3,722,346 - BWI76_RS17890 0.79 -0.9
3,722,471 + +0.9
3,722,471 + +0.3
3,722,477 + +1.9
3,722,479 - -1.4
3,722,640 + +0.2
3,722,711 + BWI76_RS17895 0.13 -0.6
3,722,719 - BWI76_RS17895 0.14 +0.1
3,722,862 - BWI76_RS17895 0.32 -1.3
3,723,115 - BWI76_RS17895 0.63 -0.9
3,723,125 - -0.6
3,723,311 - BWI76_RS17895 0.88 -1.6
3,723,339 + +1.0
3,723,358 + -0.1
3,723,405 - -0.4
3,723,491 + -0.1
3,723,501 + -0.8
3,723,542 - BWI76_RS17900 0.14 -0.5
3,723,671 + BWI76_RS17900 0.29 -0.1
3,723,887 - BWI76_RS17900 0.55 +1.1
3,723,895 + BWI76_RS17900 0.56 -1.1
3,724,101 + BWI76_RS17900 0.80 +0.2
3,724,156 + BWI76_RS17900 0.86 +0.2
3,724,210 - +0.6
3,724,277 - -0.4
3,724,348 - -1.1
3,724,352 - +0.6
3,724,383 - BWI76_RS17905 0.12 -3.7

Or see this region's nucleotide sequence