Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16660

Experiment: K. M5a1 KLEB23 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS16650 and BWI76_RS16655 are separated by 30 nucleotidesBWI76_RS16655 and BWI76_RS16660 are separated by 308 nucleotidesBWI76_RS16660 and BWI76_RS16665 are separated by 1 nucleotidesBWI76_RS16665 and BWI76_RS16670 are separated by 22 nucleotides BWI76_RS16650: BWI76_RS16650 - glyoxalase I, nickel isomerase, at 3,446,577 to 3,446,960 _RS16650 BWI76_RS16655: BWI76_RS16655 - CatA-like O-acetyltransferase, at 3,446,991 to 3,447,630 _RS16655 BWI76_RS16660: BWI76_RS16660 - SfnB family sulfur acquisition oxidoreductase, at 3,447,939 to 3,449,162 _RS16660 BWI76_RS16665: BWI76_RS16665 - ABC transporter permease, at 3,449,164 to 3,449,838 _RS16665 BWI76_RS16670: BWI76_RS16670 - NLPA lipoprotein, at 3,449,861 to 3,450,637 _RS16670 Position (kb) 3447 3448 3449 3450Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3446.960 kb on + strandat 3446.981 kb on + strandat 3447.073 kb on + strand, within BWI76_RS16655at 3447.131 kb on - strand, within BWI76_RS16655at 3447.451 kb on - strand, within BWI76_RS16655at 3447.463 kb on - strand, within BWI76_RS16655at 3447.493 kb on - strand, within BWI76_RS16655at 3447.735 kb on - strandat 3448.498 kb on - strand, within BWI76_RS16660at 3448.626 kb on - strand, within BWI76_RS16660at 3448.819 kb on + strand, within BWI76_RS16660at 3448.958 kb on + strand, within BWI76_RS16660at 3449.066 kb on + strandat 3449.513 kb on - strand, within BWI76_RS16665at 3449.537 kb on + strand, within BWI76_RS16665at 3449.538 kb on - strand, within BWI76_RS16665at 3449.712 kb on - strand, within BWI76_RS16665at 3449.880 kb on + strandat 3450.033 kb on + strand, within BWI76_RS16670at 3450.041 kb on - strand, within BWI76_RS16670at 3450.124 kb on - strand, within BWI76_RS16670

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
remove
3,446,960 + -0.1
3,446,981 + -0.1
3,447,073 + BWI76_RS16655 0.13 -1.3
3,447,131 - BWI76_RS16655 0.22 -2.9
3,447,451 - BWI76_RS16655 0.72 -1.1
3,447,463 - BWI76_RS16655 0.74 -0.9
3,447,493 - BWI76_RS16655 0.78 +0.1
3,447,735 - +0.9
3,448,498 - BWI76_RS16660 0.46 -3.4
3,448,626 - BWI76_RS16660 0.56 +0.5
3,448,819 + BWI76_RS16660 0.72 -2.1
3,448,958 + BWI76_RS16660 0.83 -2.4
3,449,066 + -0.7
3,449,513 - BWI76_RS16665 0.52 -0.2
3,449,537 + BWI76_RS16665 0.55 +0.5
3,449,538 - BWI76_RS16665 0.55 +0.3
3,449,712 - BWI76_RS16665 0.81 +1.0
3,449,880 + +2.0
3,450,033 + BWI76_RS16670 0.22 +0.6
3,450,041 - BWI76_RS16670 0.23 +0.5
3,450,124 - BWI76_RS16670 0.34 +0.3

Or see this region's nucleotide sequence