Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS16535 and BWI76_RS16540 are separated by 197 nucleotides BWI76_RS16540 and BWI76_RS16545 are separated by 4 nucleotides BWI76_RS16545 and BWI76_RS16550 are separated by 4 nucleotides BWI76_RS16550 and BWI76_RS16555 are separated by 442 nucleotides BWI76_RS16555 and BWI76_RS16560 are separated by 90 nucleotides
BWI76_RS16535: BWI76_RS16535 - MATE family efflux transporter, at 3,428,107 to 3,429,480
_RS16535
BWI76_RS16540: BWI76_RS16540 - tRNA-Val, at 3,429,678 to 3,429,754
_RS16540
BWI76_RS16545: BWI76_RS16545 - tRNA-Val, at 3,429,759 to 3,429,835
_RS16545
BWI76_RS16550: BWI76_RS16550 - tRNA-Val, at 3,429,840 to 3,429,916
_RS16550
BWI76_RS16555: BWI76_RS16555 - hypothetical protein, at 3,430,359 to 3,430,544
_RS16555
BWI76_RS16560: BWI76_RS16560 - YciE/YciF family protein, at 3,430,635 to 3,431,132
_RS16560
Position (kb)
3429
3430 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3428.879 kb on - strand, within BWI76_RS16535 at 3429.214 kb on + strand, within BWI76_RS16535 at 3429.301 kb on - strand, within BWI76_RS16535 at 3429.311 kb on + strand, within BWI76_RS16535 at 3429.364 kb on + strand at 3429.446 kb on - strand at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.857 kb on + strand, within BWI76_RS16550 at 3429.864 kb on + strand, within BWI76_RS16550 at 3429.874 kb on + strand, within BWI76_RS16550 at 3429.878 kb on + strand, within BWI76_RS16550 at 3429.909 kb on + strand at 3430.218 kb on - strand at 3430.272 kb on - strand at 3430.336 kb on + strand at 3430.336 kb on + strand at 3430.368 kb on + strand at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.424 kb on + strand, within BWI76_RS16555 at 3430.433 kb on - strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand, within BWI76_RS16555 at 3430.434 kb on + strand at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.439 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555 at 3430.444 kb on + strand, within BWI76_RS16555 at 3430.592 kb on + strand at 3430.623 kb on + strand at 3430.727 kb on + strand, within BWI76_RS16560 at 3430.735 kb on - strand, within BWI76_RS16560 at 3430.735 kb on - strand, within BWI76_RS16560 at 3430.735 kb on - strand, within BWI76_RS16560 at 3430.749 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand, within BWI76_RS16560 at 3430.751 kb on + strand at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.759 kb on - strand, within BWI76_RS16560 at 3430.771 kb on - strand, within BWI76_RS16560 at 3430.771 kb on - strand, within BWI76_RS16560 at 3430.771 kb on - strand, within BWI76_RS16560 at 3430.774 kb on + strand, within BWI76_RS16560 at 3430.774 kb on + strand, within BWI76_RS16560 at 3430.774 kb on + strand, within BWI76_RS16560 at 3430.774 kb on + strand, within BWI76_RS16560 at 3430.774 kb on + strand, within BWI76_RS16560 at 3430.782 kb on - strand, within BWI76_RS16560 at 3430.782 kb on - strand at 3430.782 kb on - strand, within BWI76_RS16560 at 3430.782 kb on - strand at 3430.783 kb on - strand, within BWI76_RS16560 at 3430.783 kb on - strand, within BWI76_RS16560 at 3430.792 kb on - strand, within BWI76_RS16560 at 3430.792 kb on - strand, within BWI76_RS16560 at 3430.794 kb on - strand, within BWI76_RS16560 at 3430.794 kb on - strand, within BWI76_RS16560 at 3430.794 kb on - strand, within BWI76_RS16560 at 3430.804 kb on - strand, within BWI76_RS16560 at 3430.804 kb on - strand, within BWI76_RS16560 at 3430.863 kb on + strand, within BWI76_RS16560 at 3430.904 kb on - strand, within BWI76_RS16560
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 3,428,879 - BWI76_RS16535 0.56 +1.1 3,429,214 + BWI76_RS16535 0.81 +0.4 3,429,301 - BWI76_RS16535 0.87 +1.8 3,429,311 + BWI76_RS16535 0.88 +0.6 3,429,364 + +0.3 3,429,446 - -1.1 3,429,857 + BWI76_RS16550 0.22 -4.1 3,429,857 + BWI76_RS16550 0.22 -0.2 3,429,864 + BWI76_RS16550 0.31 -0.4 3,429,874 + BWI76_RS16550 0.44 -1.6 3,429,878 + BWI76_RS16550 0.49 -1.0 3,429,909 + +0.4 3,430,218 - -0.4 3,430,272 - +1.9 3,430,336 + -1.8 3,430,336 + +0.0 3,430,368 + +1.9 3,430,424 + BWI76_RS16555 0.35 +0.8 3,430,424 + BWI76_RS16555 0.35 -1.4 3,430,424 + BWI76_RS16555 0.35 +2.4 3,430,433 - BWI76_RS16555 0.40 +3.1 3,430,434 + BWI76_RS16555 0.40 -0.9 3,430,434 + BWI76_RS16555 0.40 +3.1 3,430,434 + BWI76_RS16555 0.40 +0.1 3,430,434 + +0.9 3,430,439 + BWI76_RS16555 0.43 +1.2 3,430,439 + BWI76_RS16555 0.43 +1.5 3,430,444 + BWI76_RS16555 0.46 -0.4 3,430,444 + BWI76_RS16555 0.46 -2.1 3,430,592 + +0.7 3,430,623 + -0.9 3,430,727 + BWI76_RS16560 0.18 -2.8 3,430,735 - BWI76_RS16560 0.20 +0.9 3,430,735 - BWI76_RS16560 0.20 +0.8 3,430,735 - BWI76_RS16560 0.20 -0.9 3,430,749 + BWI76_RS16560 0.23 -1.2 3,430,751 + BWI76_RS16560 0.23 -0.6 3,430,751 + BWI76_RS16560 0.23 -2.0 3,430,751 + BWI76_RS16560 0.23 -1.1 3,430,751 + BWI76_RS16560 0.23 +0.4 3,430,751 + BWI76_RS16560 0.23 +4.3 3,430,751 + BWI76_RS16560 0.23 +0.6 3,430,751 + BWI76_RS16560 0.23 +1.0 3,430,751 + BWI76_RS16560 0.23 +1.9 3,430,751 + +0.9 3,430,759 - BWI76_RS16560 0.25 +1.5 3,430,759 - BWI76_RS16560 0.25 -2.4 3,430,759 - BWI76_RS16560 0.25 +1.4 3,430,759 - BWI76_RS16560 0.25 -0.9 3,430,759 - BWI76_RS16560 0.25 +1.9 3,430,759 - BWI76_RS16560 0.25 +2.2 3,430,759 - BWI76_RS16560 0.25 -2.2 3,430,759 - BWI76_RS16560 0.25 -2.1 3,430,759 - BWI76_RS16560 0.25 -1.2 3,430,771 - BWI76_RS16560 0.27 -2.1 3,430,771 - BWI76_RS16560 0.27 -0.4 3,430,771 - BWI76_RS16560 0.27 +1.5 3,430,774 + BWI76_RS16560 0.28 -1.4 3,430,774 + BWI76_RS16560 0.28 -0.6 3,430,774 + BWI76_RS16560 0.28 -0.1 3,430,774 + BWI76_RS16560 0.28 +0.9 3,430,774 + BWI76_RS16560 0.28 -0.4 3,430,782 - BWI76_RS16560 0.30 -1.9 3,430,782 - +0.4 3,430,782 - BWI76_RS16560 0.30 -0.1 3,430,782 - -0.1 3,430,783 - BWI76_RS16560 0.30 +1.9 3,430,783 - BWI76_RS16560 0.30 +0.5 3,430,792 - BWI76_RS16560 0.32 -0.1 3,430,792 - BWI76_RS16560 0.32 -1.5 3,430,794 - BWI76_RS16560 0.32 -0.4 3,430,794 - BWI76_RS16560 0.32 -2.0 3,430,794 - BWI76_RS16560 0.32 -3.1 3,430,804 - BWI76_RS16560 0.34 +1.4 3,430,804 - BWI76_RS16560 0.34 -0.4 3,430,863 + BWI76_RS16560 0.46 +1.9 3,430,904 - BWI76_RS16560 0.54 -1.2
Or see this region's nucleotide sequence