Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16550

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16535 and BWI76_RS16540 are separated by 197 nucleotidesBWI76_RS16540 and BWI76_RS16545 are separated by 4 nucleotidesBWI76_RS16545 and BWI76_RS16550 are separated by 4 nucleotidesBWI76_RS16550 and BWI76_RS16555 are separated by 442 nucleotidesBWI76_RS16555 and BWI76_RS16560 are separated by 90 nucleotides BWI76_RS16535: BWI76_RS16535 - MATE family efflux transporter, at 3,428,107 to 3,429,480 _RS16535 BWI76_RS16540: BWI76_RS16540 - tRNA-Val, at 3,429,678 to 3,429,754 _RS16540 BWI76_RS16545: BWI76_RS16545 - tRNA-Val, at 3,429,759 to 3,429,835 _RS16545 BWI76_RS16550: BWI76_RS16550 - tRNA-Val, at 3,429,840 to 3,429,916 _RS16550 BWI76_RS16555: BWI76_RS16555 - hypothetical protein, at 3,430,359 to 3,430,544 _RS16555 BWI76_RS16560: BWI76_RS16560 - YciE/YciF family protein, at 3,430,635 to 3,431,132 _RS16560 Position (kb) 3429 3430Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 3428.879 kb on - strand, within BWI76_RS16535at 3429.214 kb on + strand, within BWI76_RS16535at 3429.301 kb on - strand, within BWI76_RS16535at 3429.311 kb on + strand, within BWI76_RS16535at 3429.364 kb on + strandat 3429.446 kb on - strandat 3429.857 kb on + strand, within BWI76_RS16550at 3429.857 kb on + strand, within BWI76_RS16550at 3429.864 kb on + strand, within BWI76_RS16550at 3429.874 kb on + strand, within BWI76_RS16550at 3429.878 kb on + strand, within BWI76_RS16550at 3429.909 kb on + strandat 3430.218 kb on - strandat 3430.272 kb on - strandat 3430.336 kb on + strandat 3430.336 kb on + strandat 3430.368 kb on + strandat 3430.424 kb on + strand, within BWI76_RS16555at 3430.424 kb on + strand, within BWI76_RS16555at 3430.424 kb on + strand, within BWI76_RS16555at 3430.433 kb on - strand, within BWI76_RS16555at 3430.434 kb on + strand, within BWI76_RS16555at 3430.434 kb on + strand, within BWI76_RS16555at 3430.434 kb on + strand, within BWI76_RS16555at 3430.434 kb on + strandat 3430.439 kb on + strand, within BWI76_RS16555at 3430.439 kb on + strand, within BWI76_RS16555at 3430.444 kb on + strand, within BWI76_RS16555at 3430.444 kb on + strand, within BWI76_RS16555at 3430.592 kb on + strandat 3430.623 kb on + strandat 3430.727 kb on + strand, within BWI76_RS16560at 3430.735 kb on - strand, within BWI76_RS16560at 3430.735 kb on - strand, within BWI76_RS16560at 3430.735 kb on - strand, within BWI76_RS16560at 3430.749 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strand, within BWI76_RS16560at 3430.751 kb on + strandat 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.759 kb on - strand, within BWI76_RS16560at 3430.771 kb on - strand, within BWI76_RS16560at 3430.771 kb on - strand, within BWI76_RS16560at 3430.771 kb on - strand, within BWI76_RS16560at 3430.774 kb on + strand, within BWI76_RS16560at 3430.774 kb on + strand, within BWI76_RS16560at 3430.774 kb on + strand, within BWI76_RS16560at 3430.774 kb on + strand, within BWI76_RS16560at 3430.774 kb on + strand, within BWI76_RS16560at 3430.782 kb on - strand, within BWI76_RS16560at 3430.782 kb on - strandat 3430.782 kb on - strand, within BWI76_RS16560at 3430.782 kb on - strandat 3430.783 kb on - strand, within BWI76_RS16560at 3430.783 kb on - strand, within BWI76_RS16560at 3430.792 kb on - strand, within BWI76_RS16560at 3430.792 kb on - strand, within BWI76_RS16560at 3430.794 kb on - strand, within BWI76_RS16560at 3430.794 kb on - strand, within BWI76_RS16560at 3430.794 kb on - strand, within BWI76_RS16560at 3430.804 kb on - strand, within BWI76_RS16560at 3430.804 kb on - strand, within BWI76_RS16560at 3430.863 kb on + strand, within BWI76_RS16560at 3430.904 kb on - strand, within BWI76_RS16560

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,428,879 - BWI76_RS16535 0.56 +1.1
3,429,214 + BWI76_RS16535 0.81 +0.4
3,429,301 - BWI76_RS16535 0.87 +1.8
3,429,311 + BWI76_RS16535 0.88 +0.6
3,429,364 + +0.3
3,429,446 - -1.1
3,429,857 + BWI76_RS16550 0.22 -4.1
3,429,857 + BWI76_RS16550 0.22 -0.2
3,429,864 + BWI76_RS16550 0.31 -0.4
3,429,874 + BWI76_RS16550 0.44 -1.6
3,429,878 + BWI76_RS16550 0.49 -1.0
3,429,909 + +0.4
3,430,218 - -0.4
3,430,272 - +1.9
3,430,336 + -1.8
3,430,336 + +0.0
3,430,368 + +1.9
3,430,424 + BWI76_RS16555 0.35 +0.8
3,430,424 + BWI76_RS16555 0.35 -1.4
3,430,424 + BWI76_RS16555 0.35 +2.4
3,430,433 - BWI76_RS16555 0.40 +3.1
3,430,434 + BWI76_RS16555 0.40 -0.9
3,430,434 + BWI76_RS16555 0.40 +3.1
3,430,434 + BWI76_RS16555 0.40 +0.1
3,430,434 + +0.9
3,430,439 + BWI76_RS16555 0.43 +1.2
3,430,439 + BWI76_RS16555 0.43 +1.5
3,430,444 + BWI76_RS16555 0.46 -0.4
3,430,444 + BWI76_RS16555 0.46 -2.1
3,430,592 + +0.7
3,430,623 + -0.9
3,430,727 + BWI76_RS16560 0.18 -2.8
3,430,735 - BWI76_RS16560 0.20 +0.9
3,430,735 - BWI76_RS16560 0.20 +0.8
3,430,735 - BWI76_RS16560 0.20 -0.9
3,430,749 + BWI76_RS16560 0.23 -1.2
3,430,751 + BWI76_RS16560 0.23 -0.6
3,430,751 + BWI76_RS16560 0.23 -2.0
3,430,751 + BWI76_RS16560 0.23 -1.1
3,430,751 + BWI76_RS16560 0.23 +0.4
3,430,751 + BWI76_RS16560 0.23 +4.3
3,430,751 + BWI76_RS16560 0.23 +0.6
3,430,751 + BWI76_RS16560 0.23 +1.0
3,430,751 + BWI76_RS16560 0.23 +1.9
3,430,751 + +0.9
3,430,759 - BWI76_RS16560 0.25 +1.5
3,430,759 - BWI76_RS16560 0.25 -2.4
3,430,759 - BWI76_RS16560 0.25 +1.4
3,430,759 - BWI76_RS16560 0.25 -0.9
3,430,759 - BWI76_RS16560 0.25 +1.9
3,430,759 - BWI76_RS16560 0.25 +2.2
3,430,759 - BWI76_RS16560 0.25 -2.2
3,430,759 - BWI76_RS16560 0.25 -2.1
3,430,759 - BWI76_RS16560 0.25 -1.2
3,430,771 - BWI76_RS16560 0.27 -2.1
3,430,771 - BWI76_RS16560 0.27 -0.4
3,430,771 - BWI76_RS16560 0.27 +1.5
3,430,774 + BWI76_RS16560 0.28 -1.4
3,430,774 + BWI76_RS16560 0.28 -0.6
3,430,774 + BWI76_RS16560 0.28 -0.1
3,430,774 + BWI76_RS16560 0.28 +0.9
3,430,774 + BWI76_RS16560 0.28 -0.4
3,430,782 - BWI76_RS16560 0.30 -1.9
3,430,782 - +0.4
3,430,782 - BWI76_RS16560 0.30 -0.1
3,430,782 - -0.1
3,430,783 - BWI76_RS16560 0.30 +1.9
3,430,783 - BWI76_RS16560 0.30 +0.5
3,430,792 - BWI76_RS16560 0.32 -0.1
3,430,792 - BWI76_RS16560 0.32 -1.5
3,430,794 - BWI76_RS16560 0.32 -0.4
3,430,794 - BWI76_RS16560 0.32 -2.0
3,430,794 - BWI76_RS16560 0.32 -3.1
3,430,804 - BWI76_RS16560 0.34 +1.4
3,430,804 - BWI76_RS16560 0.34 -0.4
3,430,863 + BWI76_RS16560 0.46 +1.9
3,430,904 - BWI76_RS16560 0.54 -1.2

Or see this region's nucleotide sequence