Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS16230

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS16225 and BWI76_RS16230 are separated by 36 nucleotidesBWI76_RS16230 and BWI76_RS16235 overlap by 4 nucleotides BWI76_RS16225: BWI76_RS16225 - arginine:ornithine antiporter, at 3,365,468 to 3,366,850 _RS16225 BWI76_RS16230: BWI76_RS16230 - dihydromonapterin reductase, at 3,366,887 to 3,367,612 _RS16230 BWI76_RS16235: BWI76_RS16235 - membrane protein, at 3,367,609 to 3,367,944 _RS16235 Position (kb) 3366 3367 3368Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3365.958 kb on - strand, within BWI76_RS16225at 3366.062 kb on - strand, within BWI76_RS16225at 3366.087 kb on - strand, within BWI76_RS16225at 3366.160 kb on - strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.356 kb on + strand, within BWI76_RS16225at 3366.552 kb on + strand, within BWI76_RS16225at 3367.111 kb on + strand, within BWI76_RS16230at 3367.342 kb on - strand, within BWI76_RS16230at 3367.527 kb on + strandat 3367.557 kb on - strandat 3367.647 kb on + strand, within BWI76_RS16235at 3367.654 kb on + strand, within BWI76_RS16235at 3367.816 kb on - strand, within BWI76_RS16235

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,365,958 - BWI76_RS16225 0.35 -1.1
3,366,062 - BWI76_RS16225 0.43 +0.4
3,366,087 - BWI76_RS16225 0.45 -0.2
3,366,160 - BWI76_RS16225 0.50 +1.1
3,366,356 + BWI76_RS16225 0.64 +0.2
3,366,356 + BWI76_RS16225 0.64 -0.4
3,366,552 + BWI76_RS16225 0.78 +0.8
3,367,111 + BWI76_RS16230 0.31 -0.4
3,367,342 - BWI76_RS16230 0.63 -4.2
3,367,527 + -0.6
3,367,557 - +2.2
3,367,647 + BWI76_RS16235 0.11 +0.2
3,367,654 + BWI76_RS16235 0.13 -2.6
3,367,816 - BWI76_RS16235 0.62 +0.2

Or see this region's nucleotide sequence