Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15735

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15720 and BWI76_RS15725 overlap by 1 nucleotidesBWI76_RS15725 and BWI76_RS15730 are separated by 260 nucleotidesBWI76_RS15730 and BWI76_RS15735 overlap by 8 nucleotidesBWI76_RS15735 and BWI76_RS15740 overlap by 4 nucleotidesBWI76_RS15740 and BWI76_RS15745 overlap by 1 nucleotides BWI76_RS15720: BWI76_RS15720 - prophage protein NinE, at 3,279,351 to 3,279,521 _RS15720 BWI76_RS15725: BWI76_RS15725 - hypothetical protein, at 3,279,521 to 3,279,976 _RS15725 BWI76_RS15730: BWI76_RS15730 - hypothetical protein, at 3,280,237 to 3,280,467 _RS15730 BWI76_RS15735: BWI76_RS15735 - hypothetical protein, at 3,280,460 to 3,281,005 _RS15735 BWI76_RS15740: BWI76_RS15740 - HNH endonuclease, at 3,281,002 to 3,281,382 _RS15740 BWI76_RS15745: BWI76_RS15745 - hypothetical protein, at 3,281,382 to 3,282,116 _RS15745 Position (kb) 3280 3281 3282Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3279.550 kb on - strandat 3279.838 kb on + strand, within BWI76_RS15725at 3279.846 kb on - strand, within BWI76_RS15725at 3279.864 kb on + strand, within BWI76_RS15725at 3279.949 kb on + strandat 3280.350 kb on - strand, within BWI76_RS15730at 3280.459 kb on - strandat 3280.712 kb on + strand, within BWI76_RS15735at 3280.717 kb on - strand, within BWI76_RS15735at 3280.976 kb on - strandat 3281.124 kb on - strand, within BWI76_RS15740at 3281.236 kb on + strand, within BWI76_RS15740at 3281.238 kb on + strand, within BWI76_RS15740at 3281.520 kb on - strand, within BWI76_RS15745at 3281.692 kb on + strand, within BWI76_RS15745at 3281.700 kb on - strand, within BWI76_RS15745at 3281.917 kb on + strand, within BWI76_RS15745at 3281.925 kb on - strand, within BWI76_RS15745

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,279,550 - +0.2
3,279,838 + BWI76_RS15725 0.70 +1.2
3,279,846 - BWI76_RS15725 0.71 -0.2
3,279,864 + BWI76_RS15725 0.75 -0.4
3,279,949 + -0.2
3,280,350 - BWI76_RS15730 0.49 +0.9
3,280,459 - -0.7
3,280,712 + BWI76_RS15735 0.46 -2.8
3,280,717 - BWI76_RS15735 0.47 -0.7
3,280,976 - -0.5
3,281,124 - BWI76_RS15740 0.32 -2.8
3,281,236 + BWI76_RS15740 0.61 -1.8
3,281,238 + BWI76_RS15740 0.62 -0.5
3,281,520 - BWI76_RS15745 0.19 -0.3
3,281,692 + BWI76_RS15745 0.42 -2.2
3,281,700 - BWI76_RS15745 0.43 -3.0
3,281,917 + BWI76_RS15745 0.73 +2.2
3,281,925 - BWI76_RS15745 0.74 -0.7

Or see this region's nucleotide sequence