Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15665

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15655 and BWI76_RS15660 overlap by 14 nucleotidesBWI76_RS15660 and BWI76_RS15665 are separated by 31 nucleotidesBWI76_RS15665 and BWI76_RS15670 are separated by 274 nucleotidesBWI76_RS15670 and BWI76_RS15675 are separated by 69 nucleotidesBWI76_RS15675 and BWI76_RS15680 are separated by 111 nucleotides BWI76_RS15655: BWI76_RS15655 - hypothetical protein, at 3,271,852 to 3,273,330 _RS15655 BWI76_RS15660: BWI76_RS15660 - hypothetical protein, at 3,273,317 to 3,273,796 _RS15660 BWI76_RS15665: BWI76_RS15665 - hypothetical protein, at 3,273,828 to 3,274,475 _RS15665 BWI76_RS15670: BWI76_RS15670 - hypothetical protein, at 3,274,750 to 3,274,950 _RS15670 BWI76_RS15675: BWI76_RS15675 - hypothetical protein, at 3,275,020 to 3,275,265 _RS15675 BWI76_RS15680: BWI76_RS15680 - hypothetical protein, at 3,275,377 to 3,275,562 _RS15680 Position (kb) 3273 3274 3275Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 3272.936 kb on + strand, within BWI76_RS15655at 3272.993 kb on + strand, within BWI76_RS15655at 3273.020 kb on - strand, within BWI76_RS15655at 3273.088 kb on + strand, within BWI76_RS15655at 3273.123 kb on + strand, within BWI76_RS15655at 3273.196 kb on + strandat 3273.209 kb on - strandat 3273.415 kb on + strand, within BWI76_RS15660at 3273.809 kb on + strandat 3273.817 kb on - strandat 3273.817 kb on - strandat 3273.867 kb on - strandat 3273.918 kb on - strand, within BWI76_RS15665at 3274.043 kb on - strand, within BWI76_RS15665at 3274.069 kb on + strand, within BWI76_RS15665at 3274.327 kb on + strand, within BWI76_RS15665at 3274.458 kb on + strandat 3274.487 kb on - strandat 3274.489 kb on - strandat 3274.494 kb on - strandat 3274.621 kb on + strandat 3274.867 kb on - strand, within BWI76_RS15670at 3274.872 kb on + strand, within BWI76_RS15670at 3274.872 kb on + strand, within BWI76_RS15670at 3274.894 kb on - strand, within BWI76_RS15670at 3275.005 kb on + strandat 3275.008 kb on - strandat 3275.165 kb on + strand, within BWI76_RS15675at 3275.186 kb on + strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.194 kb on - strand, within BWI76_RS15675at 3275.221 kb on - strand, within BWI76_RS15675at 3275.221 kb on - strand, within BWI76_RS15675at 3275.278 kb on + strandat 3275.322 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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3,272,936 + BWI76_RS15655 0.73 +0.9
3,272,993 + BWI76_RS15655 0.77 -3.1
3,273,020 - BWI76_RS15655 0.79 +1.4
3,273,088 + BWI76_RS15655 0.84 +1.4
3,273,123 + BWI76_RS15655 0.86 -3.7
3,273,196 + +0.1
3,273,209 - -0.1
3,273,415 + BWI76_RS15660 0.20 +1.2
3,273,809 + -1.9
3,273,817 - -2.7
3,273,817 - -1.4
3,273,867 - -0.4
3,273,918 - BWI76_RS15665 0.14 -2.7
3,274,043 - BWI76_RS15665 0.33 -0.0
3,274,069 + BWI76_RS15665 0.37 -2.4
3,274,327 + BWI76_RS15665 0.77 -3.0
3,274,458 + +2.0
3,274,487 - +0.8
3,274,489 - -1.9
3,274,494 - -3.1
3,274,621 + -0.3
3,274,867 - BWI76_RS15670 0.58 -0.1
3,274,872 + BWI76_RS15670 0.61 +2.1
3,274,872 + BWI76_RS15670 0.61 -4.2
3,274,894 - BWI76_RS15670 0.72 -0.8
3,275,005 + -1.6
3,275,008 - -1.9
3,275,165 + BWI76_RS15675 0.59 -0.6
3,275,186 + BWI76_RS15675 0.67 +0.1
3,275,194 - BWI76_RS15675 0.71 -1.3
3,275,194 - BWI76_RS15675 0.71 -2.6
3,275,194 - BWI76_RS15675 0.71 +1.1
3,275,221 - BWI76_RS15675 0.82 -1.2
3,275,221 - BWI76_RS15675 0.82 +2.1
3,275,278 + +1.2
3,275,322 - +0.3

Or see this region's nucleotide sequence