Experiment: K. M5a1 KLEB23 MOI 10
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15550 and BWI76_RS15555 are separated by 91 nucleotides BWI76_RS15555 and BWI76_RS15560 overlap by 4 nucleotides BWI76_RS15560 and BWI76_RS15565 are separated by 74 nucleotides BWI76_RS15565 and BWI76_RS15570 are separated by 78 nucleotides BWI76_RS15570 and BWI76_RS15575 are separated by 67 nucleotides
BWI76_RS15550: BWI76_RS15550 - hypothetical protein, at 3,256,952 to 3,259,612
_RS15550
BWI76_RS15555: BWI76_RS15555 - hypothetical protein, at 3,259,704 to 3,260,174
_RS15555
BWI76_RS15560: BWI76_RS15560 - hypothetical protein, at 3,260,171 to 3,260,503
_RS15560
BWI76_RS15565: BWI76_RS15565 - hypothetical protein, at 3,260,578 to 3,260,790
_RS15565
BWI76_RS15570: BWI76_RS15570 - phage antirepressor Ant, at 3,260,869 to 3,261,642
_RS15570
BWI76_RS15575: BWI76_RS15575 - hypothetical protein, at 3,261,710 to 3,262,429
_RS15575
Position (kb)
3260
3261 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2
3 at 3259.606 kb on + strand at 3259.607 kb on + strand at 3259.608 kb on + strand at 3259.608 kb on + strand at 3259.689 kb on + strand at 3259.708 kb on - strand at 3259.749 kb on + strand at 3259.757 kb on - strand, within BWI76_RS15555 at 3259.757 kb on - strand, within BWI76_RS15555 at 3259.757 kb on - strand, within BWI76_RS15555 at 3259.757 kb on - strand, within BWI76_RS15555 at 3259.757 kb on - strand, within BWI76_RS15555 at 3259.765 kb on - strand, within BWI76_RS15555 at 3259.776 kb on - strand, within BWI76_RS15555 at 3259.776 kb on - strand, within BWI76_RS15555 at 3259.790 kb on - strand, within BWI76_RS15555 at 3259.848 kb on - strand, within BWI76_RS15555 at 3259.889 kb on - strand, within BWI76_RS15555 at 3259.891 kb on + strand, within BWI76_RS15555 at 3259.901 kb on - strand, within BWI76_RS15555 at 3259.935 kb on - strand, within BWI76_RS15555 at 3259.985 kb on - strand, within BWI76_RS15555 at 3260.007 kb on - strand, within BWI76_RS15555 at 3260.007 kb on - strand, within BWI76_RS15555 at 3260.024 kb on - strand, within BWI76_RS15555 at 3260.024 kb on - strand, within BWI76_RS15555 at 3260.043 kb on - strand, within BWI76_RS15555 at 3260.069 kb on + strand, within BWI76_RS15555 at 3260.077 kb on - strand, within BWI76_RS15555 at 3260.077 kb on - strand, within BWI76_RS15555 at 3260.184 kb on - strand at 3260.184 kb on - strand at 3260.241 kb on - strand, within BWI76_RS15560 at 3260.248 kb on + strand, within BWI76_RS15560 at 3260.256 kb on - strand, within BWI76_RS15560 at 3260.256 kb on - strand, within BWI76_RS15560 at 3260.267 kb on - strand, within BWI76_RS15560 at 3260.269 kb on + strand, within BWI76_RS15560 at 3260.311 kb on - strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.339 kb on + strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.347 kb on - strand, within BWI76_RS15560 at 3260.348 kb on - strand, within BWI76_RS15560 at 3260.496 kb on - strand at 3260.552 kb on - strand at 3260.583 kb on - strand at 3260.621 kb on - strand, within BWI76_RS15565 at 3260.741 kb on - strand, within BWI76_RS15565 at 3260.741 kb on - strand, within BWI76_RS15565 at 3260.842 kb on - strand at 3260.854 kb on + strand at 3260.867 kb on + strand at 3260.875 kb on - strand at 3260.929 kb on - strand at 3261.039 kb on - strand, within BWI76_RS15570 at 3261.283 kb on - strand, within BWI76_RS15570 at 3261.526 kb on + strand, within BWI76_RS15570 at 3261.534 kb on - strand, within BWI76_RS15570 at 3261.747 kb on - strand at 3261.755 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10 remove 3,259,606 + +0.3 3,259,607 + -0.7 3,259,608 + -2.0 3,259,608 + -4.8 3,259,689 + -0.9 3,259,708 - -4.3 3,259,749 + +2.2 3,259,757 - BWI76_RS15555 0.11 +0.7 3,259,757 - BWI76_RS15555 0.11 -1.1 3,259,757 - BWI76_RS15555 0.11 -1.8 3,259,757 - BWI76_RS15555 0.11 -3.3 3,259,757 - BWI76_RS15555 0.11 +1.3 3,259,765 - BWI76_RS15555 0.13 -0.8 3,259,776 - BWI76_RS15555 0.15 -0.3 3,259,776 - BWI76_RS15555 0.15 +0.3 3,259,790 - BWI76_RS15555 0.18 +0.4 3,259,848 - BWI76_RS15555 0.31 -0.9 3,259,889 - BWI76_RS15555 0.39 +0.0 3,259,891 + BWI76_RS15555 0.40 +0.4 3,259,901 - BWI76_RS15555 0.42 -0.4 3,259,935 - BWI76_RS15555 0.49 -0.2 3,259,985 - BWI76_RS15555 0.60 +1.2 3,260,007 - BWI76_RS15555 0.64 -3.3 3,260,007 - BWI76_RS15555 0.64 +2.8 3,260,024 - BWI76_RS15555 0.68 -0.7 3,260,024 - BWI76_RS15555 0.68 -0.3 3,260,043 - BWI76_RS15555 0.72 +0.6 3,260,069 + BWI76_RS15555 0.77 +1.8 3,260,077 - BWI76_RS15555 0.79 +1.3 3,260,077 - BWI76_RS15555 0.79 -1.4 3,260,184 - +0.2 3,260,184 - -0.6 3,260,241 - BWI76_RS15560 0.21 +0.5 3,260,248 + BWI76_RS15560 0.23 -2.3 3,260,256 - BWI76_RS15560 0.26 -0.7 3,260,256 - BWI76_RS15560 0.26 +0.3 3,260,267 - BWI76_RS15560 0.29 +0.9 3,260,269 + BWI76_RS15560 0.29 -0.5 3,260,311 - BWI76_RS15560 0.42 -0.2 3,260,339 + BWI76_RS15560 0.50 +0.8 3,260,339 + BWI76_RS15560 0.50 +0.9 3,260,339 + BWI76_RS15560 0.50 -0.9 3,260,339 + BWI76_RS15560 0.50 +2.2 3,260,339 + BWI76_RS15560 0.50 -4.1 3,260,339 + BWI76_RS15560 0.50 -0.4 3,260,347 - BWI76_RS15560 0.53 -0.2 3,260,347 - BWI76_RS15560 0.53 -2.7 3,260,347 - BWI76_RS15560 0.53 +1.4 3,260,347 - BWI76_RS15560 0.53 +1.2 3,260,347 - BWI76_RS15560 0.53 -0.4 3,260,347 - BWI76_RS15560 0.53 -1.9 3,260,348 - BWI76_RS15560 0.53 -0.3 3,260,496 - -0.1 3,260,552 - +0.9 3,260,583 - -0.7 3,260,621 - BWI76_RS15565 0.20 -1.4 3,260,741 - BWI76_RS15565 0.77 -1.0 3,260,741 - BWI76_RS15565 0.77 -1.2 3,260,842 - -0.2 3,260,854 + -0.5 3,260,867 + +0.9 3,260,875 - -1.9 3,260,929 - -1.0 3,261,039 - BWI76_RS15570 0.22 -1.3 3,261,283 - BWI76_RS15570 0.53 -1.6 3,261,526 + BWI76_RS15570 0.85 +1.7 3,261,534 - BWI76_RS15570 0.86 -3.9 3,261,747 - -2.2 3,261,755 + -3.0
Or see this region's nucleotide sequence