Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14460

Experiment: K. M5a1 KLEB23 MOI 10

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS14455 and BWI76_RS14460 are separated by 132 nucleotidesBWI76_RS14460 and BWI76_RS14465 are separated by 329 nucleotidesBWI76_RS14465 and BWI76_RS14470 are separated by 67 nucleotides BWI76_RS14455: BWI76_RS14455 - aspartate aminotransferase family protein, at 3,015,936 to 3,017,279 _RS14455 BWI76_RS14460: BWI76_RS14460 - MurR/RpiR family transcriptional regulator, at 3,017,412 to 3,018,269 _RS14460 BWI76_RS14465: BWI76_RS14465 - transcriptional regulator, at 3,018,599 to 3,019,042 _RS14465 BWI76_RS14470: BWI76_RS14470 - L-serine ammonia-lyase, at 3,019,110 to 3,020,477 _RS14470 Position (kb) 3017 3018 3019Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3016.431 kb on + strand, within BWI76_RS14455at 3016.439 kb on - strand, within BWI76_RS14455at 3016.509 kb on - strand, within BWI76_RS14455at 3016.509 kb on - strand, within BWI76_RS14455at 3016.630 kb on - strand, within BWI76_RS14455at 3017.085 kb on + strand, within BWI76_RS14455at 3017.087 kb on - strand, within BWI76_RS14455at 3017.187 kb on + strandat 3017.245 kb on - strandat 3017.972 kb on - strand, within BWI76_RS14460at 3018.128 kb on + strand, within BWI76_RS14460at 3018.128 kb on + strand, within BWI76_RS14460at 3018.223 kb on + strandat 3018.286 kb on - strandat 3018.324 kb on - strandat 3018.375 kb on - strandat 3018.387 kb on - strandat 3018.395 kb on - strandat 3018.422 kb on - strandat 3018.614 kb on + strandat 3018.617 kb on - strandat 3018.617 kb on - strandat 3018.643 kb on + strandat 3018.671 kb on + strand, within BWI76_RS14465at 3018.671 kb on + strand, within BWI76_RS14465at 3018.726 kb on + strand, within BWI76_RS14465at 3018.759 kb on + strand, within BWI76_RS14465at 3018.967 kb on + strand, within BWI76_RS14465at 3018.968 kb on + strand, within BWI76_RS14465at 3018.970 kb on + strand, within BWI76_RS14465at 3018.983 kb on + strand, within BWI76_RS14465at 3018.983 kb on + strand, within BWI76_RS14465at 3018.983 kb on + strand, within BWI76_RS14465at 3018.991 kb on - strand, within BWI76_RS14465at 3019.003 kb on - strandat 3019.004 kb on - strandat 3019.050 kb on + strandat 3019.218 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
remove
3,016,431 + BWI76_RS14455 0.37 -0.0
3,016,439 - BWI76_RS14455 0.37 +0.6
3,016,509 - BWI76_RS14455 0.43 -0.1
3,016,509 - BWI76_RS14455 0.43 -0.4
3,016,630 - BWI76_RS14455 0.52 +0.4
3,017,085 + BWI76_RS14455 0.85 -1.2
3,017,087 - BWI76_RS14455 0.86 -1.7
3,017,187 + +1.4
3,017,245 - -0.2
3,017,972 - BWI76_RS14460 0.65 -0.8
3,018,128 + BWI76_RS14460 0.83 -3.3
3,018,128 + BWI76_RS14460 0.83 -1.3
3,018,223 + +2.0
3,018,286 - +0.4
3,018,324 - +1.0
3,018,375 - -3.2
3,018,387 - -0.3
3,018,395 - -1.0
3,018,422 - +0.4
3,018,614 + -0.6
3,018,617 - +0.8
3,018,617 - -1.3
3,018,643 + +0.8
3,018,671 + BWI76_RS14465 0.16 +0.6
3,018,671 + BWI76_RS14465 0.16 +3.3
3,018,726 + BWI76_RS14465 0.29 +1.1
3,018,759 + BWI76_RS14465 0.36 -3.4
3,018,967 + BWI76_RS14465 0.83 +0.1
3,018,968 + BWI76_RS14465 0.83 -1.2
3,018,970 + BWI76_RS14465 0.84 +1.2
3,018,983 + BWI76_RS14465 0.86 -2.2
3,018,983 + BWI76_RS14465 0.86 -0.2
3,018,983 + BWI76_RS14465 0.86 -0.3
3,018,991 - BWI76_RS14465 0.88 +0.3
3,019,003 - +0.4
3,019,004 - -1.8
3,019,050 + -0.2
3,019,218 - +1.3

Or see this region's nucleotide sequence