Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13880

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13875 and BWI76_RS13880 are separated by 44 nucleotidesBWI76_RS13880 and BWI76_RS13885 are separated by 85 nucleotides BWI76_RS13875: BWI76_RS13875 - CbbBc protein, at 2,893,629 to 2,895,929 _RS13875 BWI76_RS13880: BWI76_RS13880 - lysine transporter LysE, at 2,895,974 to 2,896,591 _RS13880 BWI76_RS13885: BWI76_RS13885 - AraC family transcriptional regulator, at 2,896,677 to 2,897,489 _RS13885 Position (kb) 2895 2896 2897Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2895.073 kb on + strand, within BWI76_RS13875at 2895.274 kb on + strand, within BWI76_RS13875at 2895.397 kb on + strand, within BWI76_RS13875at 2895.561 kb on + strand, within BWI76_RS13875at 2895.792 kb on - strandat 2896.045 kb on + strand, within BWI76_RS13880at 2896.468 kb on - strand, within BWI76_RS13880at 2896.549 kb on - strandat 2896.575 kb on + strandat 2896.628 kb on - strandat 2896.632 kb on + strandat 2896.708 kb on - strandat 2897.141 kb on + strand, within BWI76_RS13885

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,895,073 + BWI76_RS13875 0.63 +1.1
2,895,274 + BWI76_RS13875 0.71 -1.6
2,895,397 + BWI76_RS13875 0.77 -0.4
2,895,561 + BWI76_RS13875 0.84 -0.2
2,895,792 - +0.0
2,896,045 + BWI76_RS13880 0.11 -1.4
2,896,468 - BWI76_RS13880 0.80 -0.7
2,896,549 - +0.1
2,896,575 + -0.0
2,896,628 - +2.0
2,896,632 + -0.8
2,896,708 - -0.6
2,897,141 + BWI76_RS13885 0.57 -2.8

Or see this region's nucleotide sequence