Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13820

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13815 and BWI76_RS13820 are separated by 322 nucleotidesBWI76_RS13820 and BWI76_RS13825 overlap by 8 nucleotidesBWI76_RS13825 and BWI76_RS13830 are separated by 152 nucleotides BWI76_RS13815: BWI76_RS13815 - ABC transporter, at 2,881,554 to 2,883,266 _RS13815 BWI76_RS13820: BWI76_RS13820 - hypothetical protein, at 2,883,589 to 2,884,269 _RS13820 BWI76_RS13825: BWI76_RS13825 - hypothetical protein, at 2,884,262 to 2,884,957 _RS13825 BWI76_RS13830: BWI76_RS13830 - NAD-dependent malic enzyme, at 2,885,110 to 2,886,807 _RS13830 Position (kb) 2883 2884 2885Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 2882.654 kb on + strand, within BWI76_RS13815at 2883.045 kb on - strand, within BWI76_RS13815at 2883.045 kb on - strand, within BWI76_RS13815at 2883.080 kb on + strand, within BWI76_RS13815at 2883.088 kb on - strand, within BWI76_RS13815at 2883.250 kb on + strandat 2883.405 kb on + strandat 2883.405 kb on + strandat 2883.413 kb on - strandat 2883.413 kb on - strandat 2883.413 kb on - strandat 2883.502 kb on + strandat 2883.513 kb on - strandat 2883.521 kb on - strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.533 kb on + strandat 2883.534 kb on + strandat 2883.534 kb on + strandat 2883.534 kb on + strandat 2883.541 kb on - strandat 2883.542 kb on - strandat 2883.548 kb on + strandat 2883.556 kb on - strandat 2883.556 kb on - strandat 2883.561 kb on - strandat 2883.566 kb on + strandat 2883.566 kb on + strandat 2883.569 kb on - strandat 2883.571 kb on + strandat 2883.571 kb on + strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.574 kb on - strandat 2883.579 kb on - strandat 2883.579 kb on - strandat 2883.579 kb on - strandat 2883.579 kb on - strandat 2883.584 kb on - strandat 2883.651 kb on + strandat 2883.652 kb on - strandat 2883.652 kb on - strandat 2883.652 kb on - strandat 2883.652 kb on - strandat 2883.676 kb on - strand, within BWI76_RS13820at 2883.676 kb on - strand, within BWI76_RS13820at 2883.676 kb on - strand, within BWI76_RS13820at 2883.676 kb on - strand, within BWI76_RS13820at 2884.102 kb on - strand, within BWI76_RS13820at 2884.352 kb on - strand, within BWI76_RS13825at 2884.985 kb on + strandat 2885.034 kb on + strandat 2885.034 kb on + strandat 2885.034 kb on + strandat 2885.068 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.070 kb on + strandat 2885.078 kb on - strandat 2885.078 kb on - strandat 2885.078 kb on - strandat 2885.078 kb on - strandat 2885.142 kb on - strandat 2885.155 kb on - strandat 2885.176 kb on - strandat 2885.222 kb on + strandat 2885.222 kb on + strandat 2885.224 kb on + strandat 2885.230 kb on - strandat 2885.230 kb on - strandat 2885.230 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,882,654 + BWI76_RS13815 0.64 +0.3
2,883,045 - BWI76_RS13815 0.87 +0.0
2,883,045 - BWI76_RS13815 0.87 -2.9
2,883,080 + BWI76_RS13815 0.89 -0.9
2,883,088 - BWI76_RS13815 0.90 -1.2
2,883,250 + -0.9
2,883,405 + -1.1
2,883,405 + -0.2
2,883,413 - -3.2
2,883,413 - +0.9
2,883,413 - -2.2
2,883,502 + +0.5
2,883,513 - +1.0
2,883,521 - +1.4
2,883,533 + -0.6
2,883,533 + -4.1
2,883,533 + -0.9
2,883,533 + -2.4
2,883,533 + -3.9
2,883,533 + -0.2
2,883,533 + -0.9
2,883,533 + +2.8
2,883,534 + -1.5
2,883,534 + -0.5
2,883,534 + +1.2
2,883,541 - +1.0
2,883,542 - -2.4
2,883,548 + +0.1
2,883,556 - -2.4
2,883,556 - -3.0
2,883,561 - +1.1
2,883,566 + -0.9
2,883,566 + +1.5
2,883,569 - +1.5
2,883,571 + +1.7
2,883,571 + +1.6
2,883,574 - -1.0
2,883,574 - +0.3
2,883,574 - +0.1
2,883,574 - -0.8
2,883,574 - +0.8
2,883,574 - +0.7
2,883,574 - -0.0
2,883,574 - -2.0
2,883,579 - -1.0
2,883,579 - -0.6
2,883,579 - -2.6
2,883,579 - -0.4
2,883,584 - -1.2
2,883,651 + -0.2
2,883,652 - +1.8
2,883,652 - -2.4
2,883,652 - +3.1
2,883,652 - -2.4
2,883,676 - BWI76_RS13820 0.13 +2.7
2,883,676 - BWI76_RS13820 0.13 -0.0
2,883,676 - BWI76_RS13820 0.13 -0.6
2,883,676 - BWI76_RS13820 0.13 -1.6
2,884,102 - BWI76_RS13820 0.75 -1.9
2,884,352 - BWI76_RS13825 0.13 +0.4
2,884,985 + -0.4
2,885,034 + +0.3
2,885,034 + -0.6
2,885,034 + +0.2
2,885,068 + -2.2
2,885,070 + -0.3
2,885,070 + +0.9
2,885,070 + -1.7
2,885,070 + -3.5
2,885,070 + +1.4
2,885,070 + +2.1
2,885,070 + +0.1
2,885,070 + +0.7
2,885,070 + -2.1
2,885,070 + -1.0
2,885,070 + -1.0
2,885,070 + +0.9
2,885,070 + -0.4
2,885,070 + -0.8
2,885,070 + +1.9
2,885,070 + +0.8
2,885,070 + +0.4
2,885,070 + -0.6
2,885,070 + +0.8
2,885,070 + +0.5
2,885,070 + -2.6
2,885,070 + -0.2
2,885,070 + +0.2
2,885,070 + -1.0
2,885,070 + -0.2
2,885,070 + +0.0
2,885,070 + +1.4
2,885,070 + +1.7
2,885,070 + -0.0
2,885,070 + -0.6
2,885,070 + +0.6
2,885,070 + +1.0
2,885,070 + +2.5
2,885,070 + +0.7
2,885,070 + -0.4
2,885,078 - +1.5
2,885,078 - -1.7
2,885,078 - -2.3
2,885,078 - +4.0
2,885,142 - +1.0
2,885,155 - +0.5
2,885,176 - +0.5
2,885,222 + -0.1
2,885,222 + -2.0
2,885,224 + -1.0
2,885,230 - -1.9
2,885,230 - +1.3
2,885,230 - +2.0

Or see this region's nucleotide sequence