Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13785

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13780 and BWI76_RS13785 overlap by 4 nucleotidesBWI76_RS13785 and BWI76_RS13790 overlap by 4 nucleotidesBWI76_RS13790 and BWI76_RS13795 are separated by 10 nucleotides BWI76_RS13780: BWI76_RS13780 - ABC transporter ATP-binding protein, at 2,873,084 to 2,874,688 _RS13780 BWI76_RS13785: BWI76_RS13785 - ABC transporter permease, at 2,874,685 to 2,875,536 _RS13785 BWI76_RS13790: BWI76_RS13790 - peptide ABC transporter permease, at 2,875,533 to 2,876,477 _RS13790 BWI76_RS13795: BWI76_RS13795 - ABC transporter substrate binding protein, at 2,876,488 to 2,878,110 _RS13795 Position (kb) 2874 2875 2876Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2873.948 kb on - strand, within BWI76_RS13780at 2874.219 kb on - strand, within BWI76_RS13780at 2874.222 kb on + strand, within BWI76_RS13780at 2874.256 kb on + strand, within BWI76_RS13780at 2874.256 kb on + strand, within BWI76_RS13780at 2874.266 kb on + strand, within BWI76_RS13780at 2874.278 kb on - strand, within BWI76_RS13780at 2874.387 kb on - strand, within BWI76_RS13780at 2874.987 kb on - strand, within BWI76_RS13785at 2875.108 kb on + strand, within BWI76_RS13785at 2875.640 kb on - strand, within BWI76_RS13790at 2875.700 kb on - strand, within BWI76_RS13790at 2875.855 kb on + strand, within BWI76_RS13790at 2875.877 kb on + strand, within BWI76_RS13790at 2875.877 kb on + strand, within BWI76_RS13790at 2875.885 kb on - strand, within BWI76_RS13790at 2875.885 kb on - strand, within BWI76_RS13790at 2875.994 kb on + strand, within BWI76_RS13790at 2876.486 kb on + strandat 2876.494 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,873,948 - BWI76_RS13780 0.54 -2.4
2,874,219 - BWI76_RS13780 0.71 +1.5
2,874,222 + BWI76_RS13780 0.71 -1.5
2,874,256 + BWI76_RS13780 0.73 -1.1
2,874,256 + BWI76_RS13780 0.73 +0.4
2,874,266 + BWI76_RS13780 0.74 +0.2
2,874,278 - BWI76_RS13780 0.74 -1.0
2,874,387 - BWI76_RS13780 0.81 -0.3
2,874,987 - BWI76_RS13785 0.35 -1.2
2,875,108 + BWI76_RS13785 0.50 -2.3
2,875,640 - BWI76_RS13790 0.11 +0.7
2,875,700 - BWI76_RS13790 0.18 -0.2
2,875,855 + BWI76_RS13790 0.34 -3.2
2,875,877 + BWI76_RS13790 0.36 -1.1
2,875,877 + BWI76_RS13790 0.36 -0.4
2,875,885 - BWI76_RS13790 0.37 +0.0
2,875,885 - BWI76_RS13790 0.37 +0.9
2,875,994 + BWI76_RS13790 0.49 -0.6
2,876,486 + -0.6
2,876,494 - +1.8

Or see this region's nucleotide sequence