Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS13355

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS13350 and BWI76_RS13355 are separated by 183 nucleotidesBWI76_RS13355 and BWI76_RS13360 overlap by 21 nucleotides BWI76_RS13350: BWI76_RS13350 - EamA family transporter, at 2,784,486 to 2,785,394 _RS13350 BWI76_RS13355: BWI76_RS13355 - AraC family transcriptional regulator, at 2,785,578 to 2,786,444 _RS13355 BWI76_RS13360: BWI76_RS13360 - benzoate transporter, at 2,786,424 to 2,787,590 _RS13360 Position (kb) 2785 2786 2787Strain fitness (log2 ratio) -3 -2 -1 0 1at 2784.655 kb on + strand, within BWI76_RS13350at 2784.696 kb on + strand, within BWI76_RS13350at 2784.744 kb on + strand, within BWI76_RS13350at 2784.904 kb on - strand, within BWI76_RS13350at 2784.978 kb on + strand, within BWI76_RS13350at 2785.265 kb on + strand, within BWI76_RS13350at 2785.383 kb on - strandat 2785.441 kb on - strandat 2785.441 kb on - strandat 2785.533 kb on - strandat 2785.544 kb on + strandat 2785.828 kb on + strand, within BWI76_RS13355at 2785.912 kb on - strand, within BWI76_RS13355at 2786.127 kb on - strand, within BWI76_RS13355at 2786.288 kb on - strand, within BWI76_RS13355at 2786.535 kb on + strandat 2787.286 kb on - strand, within BWI76_RS13360at 2787.391 kb on - strand, within BWI76_RS13360at 2787.440 kb on - strand, within BWI76_RS13360

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,784,655 + BWI76_RS13350 0.19 +0.7
2,784,696 + BWI76_RS13350 0.23 +0.2
2,784,744 + BWI76_RS13350 0.28 -2.2
2,784,904 - BWI76_RS13350 0.46 +0.1
2,784,978 + BWI76_RS13350 0.54 -2.8
2,785,265 + BWI76_RS13350 0.86 -2.6
2,785,383 - +1.2
2,785,441 - +0.8
2,785,441 - +1.4
2,785,533 - +1.3
2,785,544 + -2.5
2,785,828 + BWI76_RS13355 0.29 -1.3
2,785,912 - BWI76_RS13355 0.39 -0.2
2,786,127 - BWI76_RS13355 0.63 -0.6
2,786,288 - BWI76_RS13355 0.82 -1.8
2,786,535 + +0.0
2,787,286 - BWI76_RS13360 0.74 +0.5
2,787,391 - BWI76_RS13360 0.83 -0.5
2,787,440 - BWI76_RS13360 0.87 +0.2

Or see this region's nucleotide sequence