Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12785

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12775 and BWI76_RS12780 are separated by 229 nucleotidesBWI76_RS12780 and BWI76_RS12785 overlap by 4 nucleotidesBWI76_RS12785 and BWI76_RS12790 are separated by 125 nucleotides BWI76_RS12775: BWI76_RS12775 - hypothetical protein, at 2,663,881 to 2,664,060 _RS12775 BWI76_RS12780: BWI76_RS12780 - hypothetical protein, at 2,664,290 to 2,664,562 _RS12780 BWI76_RS12785: BWI76_RS12785 - heat-shock protein HslJ, at 2,664,559 to 2,664,999 _RS12785 BWI76_RS12790: BWI76_RS12790 - lactate dehydrogenase, at 2,665,125 to 2,666,114 _RS12790 Position (kb) 2664 2665Strain fitness (log2 ratio) -2 -1 0 1 2 3 4 5at 2663.595 kb on + strandat 2663.640 kb on + strandat 2664.030 kb on - strand, within BWI76_RS12775at 2664.060 kb on + strandat 2664.060 kb on + strandat 2664.062 kb on + strandat 2664.067 kb on + strandat 2664.092 kb on + strandat 2664.127 kb on + strandat 2664.137 kb on + strandat 2664.137 kb on + strandat 2664.137 kb on - strandat 2664.138 kb on + strandat 2664.145 kb on - strandat 2664.152 kb on - strandat 2664.193 kb on + strandat 2664.220 kb on + strandat 2664.227 kb on + strandat 2664.235 kb on - strandat 2664.333 kb on - strand, within BWI76_RS12780at 2664.409 kb on + strand, within BWI76_RS12780at 2664.665 kb on - strand, within BWI76_RS12785at 2664.706 kb on + strand, within BWI76_RS12785at 2664.915 kb on + strand, within BWI76_RS12785at 2664.923 kb on - strand, within BWI76_RS12785at 2664.923 kb on - strand, within BWI76_RS12785at 2664.928 kb on - strand, within BWI76_RS12785at 2665.775 kb on + strand, within BWI76_RS12790

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,663,595 + +1.1
2,663,640 + +3.1
2,664,030 - BWI76_RS12775 0.83 +0.0
2,664,060 + +0.3
2,664,060 + +1.9
2,664,062 + -0.8
2,664,067 + +1.4
2,664,092 + -0.0
2,664,127 + +1.0
2,664,137 + -0.1
2,664,137 + +0.0
2,664,137 - +0.6
2,664,138 + +2.4
2,664,145 - +1.0
2,664,152 - +2.9
2,664,193 + +0.6
2,664,220 + -0.0
2,664,227 + -1.9
2,664,235 - +1.3
2,664,333 - BWI76_RS12780 0.16 +5.0
2,664,409 + BWI76_RS12780 0.44 +1.0
2,664,665 - BWI76_RS12785 0.24 -2.2
2,664,706 + BWI76_RS12785 0.33 -1.9
2,664,915 + BWI76_RS12785 0.81 -2.0
2,664,923 - BWI76_RS12785 0.83 -2.5
2,664,923 - BWI76_RS12785 0.83 -1.8
2,664,928 - BWI76_RS12785 0.84 -0.3
2,665,775 + BWI76_RS12790 0.66 -0.2

Or see this region's nucleotide sequence