Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS12390

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS12385 and BWI76_RS12390 are separated by 135 nucleotidesBWI76_RS12390 and BWI76_RS12395 are separated by 349 nucleotides BWI76_RS12385: BWI76_RS12385 - DNA polymerase V subunit UmuC, at 2,586,868 to 2,588,133 _RS12385 BWI76_RS12390: BWI76_RS12390 - antibiotic biosynthesis monooxygenase, at 2,588,269 to 2,588,568 _RS12390 BWI76_RS12395: BWI76_RS12395 - zinc-binding alcohol dehydrogenase, at 2,588,918 to 2,589,901 _RS12395 Position (kb) 2588 2589Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2587.287 kb on + strand, within BWI76_RS12385at 2587.321 kb on + strand, within BWI76_RS12385at 2587.367 kb on + strand, within BWI76_RS12385at 2587.471 kb on + strand, within BWI76_RS12385at 2587.548 kb on - strand, within BWI76_RS12385at 2587.560 kb on + strand, within BWI76_RS12385at 2587.568 kb on - strandat 2587.810 kb on + strand, within BWI76_RS12385at 2587.963 kb on + strand, within BWI76_RS12385at 2588.096 kb on + strandat 2588.104 kb on - strandat 2588.116 kb on - strandat 2588.230 kb on - strandat 2588.365 kb on + strandat 2588.435 kb on + strand, within BWI76_RS12390at 2588.494 kb on + strand, within BWI76_RS12390at 2588.624 kb on - strandat 2588.624 kb on - strandat 2588.649 kb on - strandat 2588.675 kb on - strandat 2588.710 kb on + strandat 2588.951 kb on + strandat 2588.994 kb on - strandat 2589.188 kb on - strand, within BWI76_RS12395at 2589.353 kb on + strand, within BWI76_RS12395at 2589.381 kb on - strand, within BWI76_RS12395at 2589.495 kb on + strand, within BWI76_RS12395

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,587,287 + BWI76_RS12385 0.33 -2.5
2,587,321 + BWI76_RS12385 0.36 -0.2
2,587,367 + BWI76_RS12385 0.39 -1.4
2,587,471 + BWI76_RS12385 0.48 -1.7
2,587,548 - BWI76_RS12385 0.54 -1.2
2,587,560 + BWI76_RS12385 0.55 -0.4
2,587,568 - -1.0
2,587,810 + BWI76_RS12385 0.74 +0.5
2,587,963 + BWI76_RS12385 0.86 +1.5
2,588,096 + -2.0
2,588,104 - -0.6
2,588,116 - -0.6
2,588,230 - +0.3
2,588,365 + +2.0
2,588,435 + BWI76_RS12390 0.55 -0.3
2,588,494 + BWI76_RS12390 0.75 -3.9
2,588,624 - -1.1
2,588,624 - -0.1
2,588,649 - -0.9
2,588,675 - +0.4
2,588,710 + -2.3
2,588,951 + -2.5
2,588,994 - +1.5
2,589,188 - BWI76_RS12395 0.27 -2.0
2,589,353 + BWI76_RS12395 0.44 -2.1
2,589,381 - BWI76_RS12395 0.47 -2.0
2,589,495 + BWI76_RS12395 0.59 -0.7

Or see this region's nucleotide sequence