Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS11350

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS11345 and BWI76_RS11350 are separated by 71 nucleotidesBWI76_RS11350 and BWI76_RS11355 are separated by 75 nucleotides BWI76_RS11345: BWI76_RS11345 - LysR family transcriptional regulator, at 2,390,019 to 2,390,903 _RS11345 BWI76_RS11350: BWI76_RS11350 - DeoR family transcriptional regulator, at 2,390,975 to 2,392,759 _RS11350 BWI76_RS11355: BWI76_RS11355 - phosphodiesterase, at 2,392,835 to 2,394,022 _RS11355 Position (kb) 2390 2391 2392 2393Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 2390.229 kb on + strand, within BWI76_RS11345at 2390.595 kb on + strand, within BWI76_RS11345at 2390.605 kb on + strand, within BWI76_RS11345at 2390.859 kb on + strandat 2391.025 kb on - strandat 2391.135 kb on + strandat 2391.175 kb on - strand, within BWI76_RS11350at 2391.383 kb on - strand, within BWI76_RS11350at 2391.388 kb on - strand, within BWI76_RS11350at 2391.547 kb on + strand, within BWI76_RS11350at 2391.620 kb on - strand, within BWI76_RS11350at 2391.740 kb on - strand, within BWI76_RS11350at 2392.705 kb on + strandat 2392.714 kb on - strandat 2392.742 kb on - strandat 2392.819 kb on - strandat 2392.946 kb on + strandat 2393.191 kb on + strand, within BWI76_RS11355at 2393.291 kb on + strand, within BWI76_RS11355at 2393.352 kb on - strand, within BWI76_RS11355at 2393.354 kb on + strand, within BWI76_RS11355at 2393.362 kb on + strand, within BWI76_RS11355at 2393.362 kb on + strand, within BWI76_RS11355at 2393.535 kb on + strand, within BWI76_RS11355at 2393.543 kb on - strand, within BWI76_RS11355at 2393.679 kb on - strand, within BWI76_RS11355

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,390,229 + BWI76_RS11345 0.24 +0.2
2,390,595 + BWI76_RS11345 0.65 +0.0
2,390,605 + BWI76_RS11345 0.66 -1.6
2,390,859 + -1.7
2,391,025 - -2.0
2,391,135 + -1.4
2,391,175 - BWI76_RS11350 0.11 -1.4
2,391,383 - BWI76_RS11350 0.23 +0.3
2,391,388 - BWI76_RS11350 0.23 -1.4
2,391,547 + BWI76_RS11350 0.32 -0.7
2,391,620 - BWI76_RS11350 0.36 -2.2
2,391,740 - BWI76_RS11350 0.43 -1.8
2,392,705 + -0.1
2,392,714 - -0.0
2,392,742 - -0.0
2,392,819 - -0.0
2,392,946 + +0.2
2,393,191 + BWI76_RS11355 0.30 -1.1
2,393,291 + BWI76_RS11355 0.38 +0.2
2,393,352 - BWI76_RS11355 0.44 +4.7
2,393,354 + BWI76_RS11355 0.44 +2.1
2,393,362 + BWI76_RS11355 0.44 +0.4
2,393,362 + BWI76_RS11355 0.44 -0.8
2,393,535 + BWI76_RS11355 0.59 +0.1
2,393,543 - BWI76_RS11355 0.60 -0.1
2,393,679 - BWI76_RS11355 0.71 -0.3

Or see this region's nucleotide sequence