Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10790

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10780 and BWI76_RS10785 are separated by 286 nucleotidesBWI76_RS10785 and BWI76_RS10790 overlap by 4 nucleotidesBWI76_RS10790 and BWI76_RS10795 are separated by 193 nucleotides BWI76_RS10780: BWI76_RS10780 - pyrimidine utilization protein A, at 2,274,838 to 2,275,929 _RS10780 BWI76_RS10785: BWI76_RS10785 - transcriptional regulator, at 2,276,216 to 2,276,854 _RS10785 BWI76_RS10790: BWI76_RS10790 - hypothetical protein, at 2,276,851 to 2,277,246 _RS10790 BWI76_RS10795: BWI76_RS10795 - L-glutamate gamma-semialdehyde dehydrogenase (EC 1.2.1.88); Proline dehydrogenase (EC 1.5.5.2) (from data), at 2,277,440 to 2,281,402 _RS10795 Position (kb) 2276 2277 2278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 2275.861 kb on + strandat 2275.864 kb on - strandat 2275.869 kb on - strandat 2275.984 kb on - strandat 2276.219 kb on + strandat 2276.219 kb on + strandat 2276.227 kb on - strandat 2276.227 kb on - strandat 2276.385 kb on + strand, within BWI76_RS10785at 2276.393 kb on - strand, within BWI76_RS10785at 2276.402 kb on - strand, within BWI76_RS10785at 2276.482 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.525 kb on - strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.728 kb on + strand, within BWI76_RS10785at 2276.942 kb on + strand, within BWI76_RS10790at 2277.019 kb on + strand, within BWI76_RS10790at 2277.082 kb on + strand, within BWI76_RS10790at 2277.125 kb on + strand, within BWI76_RS10790at 2277.133 kb on - strand, within BWI76_RS10790at 2277.303 kb on + strandat 2277.330 kb on - strandat 2277.515 kb on - strandat 2277.846 kb on - strand, within BWI76_RS10795at 2277.961 kb on + strand, within BWI76_RS10795at 2278.182 kb on + strand, within BWI76_RS10795

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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2,275,861 + +0.0
2,275,864 - +0.1
2,275,869 - +0.1
2,275,984 - -1.4
2,276,219 + +0.3
2,276,219 + +2.2
2,276,227 - -0.1
2,276,227 - +0.7
2,276,385 + BWI76_RS10785 0.26 -0.4
2,276,393 - BWI76_RS10785 0.28 +0.4
2,276,402 - BWI76_RS10785 0.29 +0.3
2,276,482 - BWI76_RS10785 0.42 -1.0
2,276,525 - BWI76_RS10785 0.48 -1.9
2,276,525 - BWI76_RS10785 0.48 -1.2
2,276,728 + BWI76_RS10785 0.80 -3.8
2,276,728 + BWI76_RS10785 0.80 -1.3
2,276,942 + BWI76_RS10790 0.23 -1.0
2,277,019 + BWI76_RS10790 0.42 -2.4
2,277,082 + BWI76_RS10790 0.58 -1.5
2,277,125 + BWI76_RS10790 0.69 -3.5
2,277,133 - BWI76_RS10790 0.71 +0.1
2,277,303 + -1.0
2,277,330 - -0.2
2,277,515 - -1.5
2,277,846 - BWI76_RS10795 0.10 +0.5
2,277,961 + BWI76_RS10795 0.13 +0.8
2,278,182 + BWI76_RS10795 0.19 -0.2

Or see this region's nucleotide sequence