Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS08110

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS08100 and BWI76_RS08105 overlap by 1 nucleotidesBWI76_RS08105 and BWI76_RS08110 are separated by 163 nucleotidesBWI76_RS08110 and BWI76_RS08115 are separated by 356 nucleotides BWI76_RS08100: BWI76_RS08100 - glutamate/aspartate transporter permease GltK, at 1,717,092 to 1,717,766 _RS08100 BWI76_RS08105: BWI76_RS08105 - glutamate/aspartate ABC transporter permease GltJ, at 1,717,766 to 1,718,506 _RS08105 BWI76_RS08110: BWI76_RS08110 - glutamate/aspartate ABC transporter substrate-binding protein, at 1,718,670 to 1,719,581 _RS08110 BWI76_RS08115: BWI76_RS08115 - apolipoprotein N-acyltransferase, at 1,719,938 to 1,721,476 _RS08115 Position (kb) 1718 1719 1720Strain fitness (log2 ratio) -2 -1 0 1 2at 1717.699 kb on + strandat 1717.856 kb on + strand, within BWI76_RS08105at 1717.883 kb on + strand, within BWI76_RS08105at 1717.906 kb on - strand, within BWI76_RS08105at 1718.024 kb on - strand, within BWI76_RS08105at 1718.034 kb on - strand, within BWI76_RS08105at 1718.122 kb on + strand, within BWI76_RS08105at 1718.210 kb on - strand, within BWI76_RS08105at 1718.244 kb on - strand, within BWI76_RS08105at 1718.333 kb on + strand, within BWI76_RS08105at 1718.416 kb on + strand, within BWI76_RS08105at 1718.703 kb on - strandat 1719.091 kb on - strand, within BWI76_RS08110at 1719.115 kb on + strand, within BWI76_RS08110at 1719.115 kb on + strand, within BWI76_RS08110at 1719.377 kb on + strand, within BWI76_RS08110

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,717,699 + -0.7
1,717,856 + BWI76_RS08105 0.12 -1.4
1,717,883 + BWI76_RS08105 0.16 +1.0
1,717,906 - BWI76_RS08105 0.19 -0.6
1,718,024 - BWI76_RS08105 0.35 -0.1
1,718,034 - BWI76_RS08105 0.36 -0.4
1,718,122 + BWI76_RS08105 0.48 -1.5
1,718,210 - BWI76_RS08105 0.60 +0.7
1,718,244 - BWI76_RS08105 0.65 -0.3
1,718,333 + BWI76_RS08105 0.77 +0.8
1,718,416 + BWI76_RS08105 0.88 -1.6
1,718,703 - +1.8
1,719,091 - BWI76_RS08110 0.46 -0.6
1,719,115 + BWI76_RS08110 0.49 -1.3
1,719,115 + BWI76_RS08110 0.49 -1.8
1,719,377 + BWI76_RS08110 0.78 -2.7

Or see this region's nucleotide sequence