Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS07450

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS07445 and BWI76_RS07450 are separated by 109 nucleotidesBWI76_RS07450 and BWI76_RS07455 are separated by 265 nucleotides BWI76_RS07445: BWI76_RS07445 - MFS transporter, at 1,571,121 to 1,572,548 _RS07445 BWI76_RS07450: BWI76_RS07450 - transcriptional regulator, at 1,572,658 to 1,573,524 _RS07450 BWI76_RS07455: BWI76_RS07455 - NAD(P)H nitroreductase, at 1,573,790 to 1,574,443 _RS07455 Position (kb) 1572 1573 1574Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1571.873 kb on + strand, within BWI76_RS07445at 1571.924 kb on + strand, within BWI76_RS07445at 1571.932 kb on - strand, within BWI76_RS07445at 1571.984 kb on + strand, within BWI76_RS07445at 1572.283 kb on - strand, within BWI76_RS07445at 1572.494 kb on - strandat 1572.507 kb on + strandat 1572.571 kb on - strandat 1572.924 kb on + strand, within BWI76_RS07450at 1573.171 kb on - strand, within BWI76_RS07450at 1573.321 kb on + strand, within BWI76_RS07450at 1573.332 kb on - strand, within BWI76_RS07450at 1573.344 kb on + strand, within BWI76_RS07450at 1573.430 kb on - strand, within BWI76_RS07450at 1573.704 kb on + strandat 1573.705 kb on - strandat 1573.714 kb on + strandat 1573.827 kb on + strandat 1573.882 kb on + strand, within BWI76_RS07455at 1573.901 kb on - strand, within BWI76_RS07455at 1573.906 kb on - strand, within BWI76_RS07455at 1574.160 kb on + strand, within BWI76_RS07455at 1574.165 kb on + strand, within BWI76_RS07455at 1574.465 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,571,873 + BWI76_RS07445 0.53 -0.1
1,571,924 + BWI76_RS07445 0.56 -0.5
1,571,932 - BWI76_RS07445 0.57 -0.6
1,571,984 + BWI76_RS07445 0.60 -0.7
1,572,283 - BWI76_RS07445 0.81 +0.1
1,572,494 - +0.7
1,572,507 + +0.4
1,572,571 - +0.3
1,572,924 + BWI76_RS07450 0.31 +0.3
1,573,171 - BWI76_RS07450 0.59 +1.1
1,573,321 + BWI76_RS07450 0.76 +0.7
1,573,332 - BWI76_RS07450 0.78 -1.6
1,573,344 + BWI76_RS07450 0.79 +1.7
1,573,430 - BWI76_RS07450 0.89 -0.7
1,573,704 + -3.8
1,573,705 - -0.6
1,573,714 + -1.1
1,573,827 + -0.0
1,573,882 + BWI76_RS07455 0.14 -1.0
1,573,901 - BWI76_RS07455 0.17 -0.1
1,573,906 - BWI76_RS07455 0.18 +0.3
1,574,160 + BWI76_RS07455 0.57 -1.4
1,574,165 + BWI76_RS07455 0.57 -2.2
1,574,465 - -0.0

Or see this region's nucleotide sequence