Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS06075

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS06065 and BWI76_RS06070 are separated by 11 nucleotidesBWI76_RS06070 and BWI76_RS06075 overlap by 4 nucleotidesBWI76_RS06075 and BWI76_RS06080 overlap by 4 nucleotidesBWI76_RS06080 and BWI76_RS06085 are separated by 82 nucleotides BWI76_RS06065: BWI76_RS06065 - taurine ABC transporter substrate-binding protein, at 1,274,898 to 1,275,860 _RS06065 BWI76_RS06070: BWI76_RS06070 - taurine transporter ATP-binding subunit, at 1,275,872 to 1,276,639 _RS06070 BWI76_RS06075: BWI76_RS06075 - taurine transporter subunit, at 1,276,636 to 1,277,463 _RS06075 BWI76_RS06080: BWI76_RS06080 - taurine dioxygenase, at 1,277,460 to 1,278,311 _RS06080 BWI76_RS06085: BWI76_RS06085 - hypothetical protein, at 1,278,394 to 1,280,112 _RS06085 Position (kb) 1276 1277 1278Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1275.767 kb on + strandat 1276.057 kb on - strand, within BWI76_RS06070at 1276.071 kb on - strand, within BWI76_RS06070at 1276.071 kb on - strand, within BWI76_RS06070at 1276.143 kb on - strand, within BWI76_RS06070at 1276.221 kb on + strand, within BWI76_RS06070at 1276.606 kb on - strandat 1276.708 kb on + strandat 1276.735 kb on + strand, within BWI76_RS06075at 1277.315 kb on + strand, within BWI76_RS06075at 1277.902 kb on - strand, within BWI76_RS06080at 1278.216 kb on + strand, within BWI76_RS06080at 1278.224 kb on - strand, within BWI76_RS06080at 1278.257 kb on + strandat 1278.460 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,275,767 + -0.3
1,276,057 - BWI76_RS06070 0.24 -2.2
1,276,071 - BWI76_RS06070 0.26 +2.2
1,276,071 - BWI76_RS06070 0.26 +0.6
1,276,143 - BWI76_RS06070 0.35 -3.9
1,276,221 + BWI76_RS06070 0.45 +1.2
1,276,606 - +0.9
1,276,708 + -0.1
1,276,735 + BWI76_RS06075 0.12 -0.4
1,277,315 + BWI76_RS06075 0.82 -4.7
1,277,902 - BWI76_RS06080 0.52 +0.0
1,278,216 + BWI76_RS06080 0.89 +0.7
1,278,224 - BWI76_RS06080 0.90 +1.9
1,278,257 + -0.7
1,278,460 + +0.3

Or see this region's nucleotide sequence