Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05800

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05795 and BWI76_RS05800 overlap by 4 nucleotidesBWI76_RS05800 and BWI76_RS05805 are separated by 17 nucleotidesBWI76_RS05805 and BWI76_RS05810 overlap by 37 nucleotides BWI76_RS05795: BWI76_RS05795 - hypothetical protein, at 1,218,815 to 1,219,552 _RS05795 BWI76_RS05800: BWI76_RS05800 - phage transcriptional activator, Ogr/delta, at 1,219,549 to 1,219,794 _RS05800 BWI76_RS05805: BWI76_RS05805 - phage polarity suppression protein, at 1,219,812 to 1,220,378 _RS05805 BWI76_RS05810: BWI76_RS05810 - hypothetical protein, at 1,220,342 to 1,220,527 _RS05810 Position (kb) 1219 1220Strain fitness (log2 ratio) -3 -2 -1 0 1at 1218.756 kb on + strandat 1218.859 kb on + strandat 1218.920 kb on - strand, within BWI76_RS05795at 1218.934 kb on - strand, within BWI76_RS05795at 1219.129 kb on + strand, within BWI76_RS05795at 1219.137 kb on - strandat 1219.192 kb on - strand, within BWI76_RS05795at 1219.233 kb on - strand, within BWI76_RS05795at 1219.320 kb on - strand, within BWI76_RS05795at 1219.380 kb on + strand, within BWI76_RS05795at 1219.532 kb on - strandat 1219.752 kb on + strand, within BWI76_RS05800at 1219.947 kb on - strand, within BWI76_RS05805at 1219.965 kb on - strand, within BWI76_RS05805at 1219.980 kb on - strand, within BWI76_RS05805at 1219.996 kb on + strand, within BWI76_RS05805at 1220.092 kb on + strand, within BWI76_RS05805at 1220.105 kb on - strand, within BWI76_RS05805at 1220.161 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.166 kb on + strand, within BWI76_RS05805at 1220.213 kb on + strand, within BWI76_RS05805at 1220.221 kb on - strand, within BWI76_RS05805at 1220.361 kb on + strandat 1220.432 kb on - strand, within BWI76_RS05810at 1220.628 kb on + strandat 1220.638 kb on + strandat 1220.638 kb on + strandat 1220.656 kb on + strandat 1220.656 kb on + strandat 1220.664 kb on - strandat 1220.672 kb on + strandat 1220.672 kb on + strandat 1220.672 kb on + strandat 1220.677 kb on + strandat 1220.677 kb on + strandat 1220.734 kb on - strandat 1220.774 kb on + strandat 1220.783 kb on + strandat 1220.791 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,218,756 + -0.2
1,218,859 + -1.8
1,218,920 - BWI76_RS05795 0.14 +0.1
1,218,934 - BWI76_RS05795 0.16 +0.1
1,219,129 + BWI76_RS05795 0.43 -0.3
1,219,137 - -0.1
1,219,192 - BWI76_RS05795 0.51 -2.2
1,219,233 - BWI76_RS05795 0.57 +0.2
1,219,320 - BWI76_RS05795 0.68 -0.1
1,219,380 + BWI76_RS05795 0.77 -1.6
1,219,532 - +0.7
1,219,752 + BWI76_RS05800 0.83 -1.3
1,219,947 - BWI76_RS05805 0.24 +0.2
1,219,965 - BWI76_RS05805 0.27 -0.6
1,219,980 - BWI76_RS05805 0.30 +0.1
1,219,996 + BWI76_RS05805 0.32 +0.5
1,220,092 + BWI76_RS05805 0.49 -0.8
1,220,105 - BWI76_RS05805 0.52 +0.8
1,220,161 + BWI76_RS05805 0.62 -1.2
1,220,166 + BWI76_RS05805 0.62 -1.0
1,220,166 + BWI76_RS05805 0.62 +0.1
1,220,166 + BWI76_RS05805 0.62 -0.8
1,220,213 + BWI76_RS05805 0.71 -1.7
1,220,221 - BWI76_RS05805 0.72 +0.2
1,220,361 + -1.1
1,220,432 - BWI76_RS05810 0.48 -0.3
1,220,628 + -1.7
1,220,638 + -0.7
1,220,638 + +0.6
1,220,656 + -0.9
1,220,656 + +1.0
1,220,664 - -2.8
1,220,672 + -0.5
1,220,672 + +1.3
1,220,672 + -0.6
1,220,677 + +0.4
1,220,677 + +0.8
1,220,734 - +0.9
1,220,774 + -0.2
1,220,783 + -0.5
1,220,791 - +1.4

Or see this region's nucleotide sequence