Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05790

Experiment: K. M5a1 KLEB23 MOI 10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05775 and BWI76_RS05780 overlap by 4 nucleotidesBWI76_RS05780 and BWI76_RS05785 overlap by 4 nucleotidesBWI76_RS05785 and BWI76_RS05790 overlap by 4 nucleotidesBWI76_RS05790 and BWI76_RS05795 are separated by 551 nucleotides BWI76_RS05775: BWI76_RS05775 - hypothetical protein, at 1,216,908 to 1,217,228 _RS05775 BWI76_RS05780: BWI76_RS05780 - hypothetical protein, at 1,217,225 to 1,217,452 _RS05780 BWI76_RS05785: BWI76_RS05785 - CI repressor, at 1,217,449 to 1,218,000 _RS05785 BWI76_RS05790: BWI76_RS05790 - phage DNA-binding protein, at 1,217,997 to 1,218,263 _RS05790 BWI76_RS05795: BWI76_RS05795 - hypothetical protein, at 1,218,815 to 1,219,552 _RS05795 Position (kb) 1217 1218 1219Strain fitness (log2 ratio) -2 -1 0 1at 1217.187 kb on + strand, within BWI76_RS05775at 1217.187 kb on + strand, within BWI76_RS05775at 1217.190 kb on - strand, within BWI76_RS05775at 1217.692 kb on - strand, within BWI76_RS05785at 1217.760 kb on - strand, within BWI76_RS05785at 1217.812 kb on - strand, within BWI76_RS05785at 1218.149 kb on + strand, within BWI76_RS05790at 1218.309 kb on + strandat 1218.354 kb on - strandat 1218.422 kb on - strandat 1218.422 kb on - strandat 1218.756 kb on + strandat 1218.859 kb on + strandat 1218.920 kb on - strand, within BWI76_RS05795at 1218.934 kb on - strand, within BWI76_RS05795at 1219.129 kb on + strand, within BWI76_RS05795at 1219.137 kb on - strandat 1219.192 kb on - strand, within BWI76_RS05795at 1219.233 kb on - strand, within BWI76_RS05795

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB23 MOI 10
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1,217,187 + BWI76_RS05775 0.87 -1.5
1,217,187 + BWI76_RS05775 0.87 -0.5
1,217,190 - BWI76_RS05775 0.88 -1.7
1,217,692 - BWI76_RS05785 0.44 -0.6
1,217,760 - BWI76_RS05785 0.56 -1.0
1,217,812 - BWI76_RS05785 0.66 -2.1
1,218,149 + BWI76_RS05790 0.57 -2.1
1,218,309 + -0.1
1,218,354 - -1.8
1,218,422 - -1.1
1,218,422 - -0.7
1,218,756 + -0.2
1,218,859 + -1.8
1,218,920 - BWI76_RS05795 0.14 +0.1
1,218,934 - BWI76_RS05795 0.16 +0.1
1,219,129 + BWI76_RS05795 0.43 -0.3
1,219,137 - -0.1
1,219,192 - BWI76_RS05795 0.51 -2.2
1,219,233 - BWI76_RS05795 0.57 +0.2

Or see this region's nucleotide sequence