Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS27845

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS27840 and BWI76_RS27845 are separated by 177 nucleotidesBWI76_RS27845 and BWI76_RS27850 are separated by 245 nucleotides BWI76_RS27840: BWI76_RS27840 - putative membrane protein, transport, at 5,773,786 to 5,774,619 _RS27840 BWI76_RS27845: BWI76_RS27845 - multidrug transporter EmrD, at 5,774,797 to 5,775,981 _RS27845 BWI76_RS27850: BWI76_RS27850 - DNA-binding transcriptional regulator DsdC, at 5,776,227 to 5,777,156 _RS27850 Position (kb) 5774 5775 5776Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 5773.817 kb on + strandat 5773.898 kb on + strand, within BWI76_RS27840at 5773.929 kb on + strand, within BWI76_RS27840at 5773.951 kb on - strand, within BWI76_RS27840at 5774.008 kb on - strand, within BWI76_RS27840at 5774.029 kb on - strand, within BWI76_RS27840at 5774.184 kb on - strand, within BWI76_RS27840at 5774.195 kb on + strand, within BWI76_RS27840at 5774.203 kb on - strand, within BWI76_RS27840at 5774.256 kb on + strand, within BWI76_RS27840at 5774.297 kb on + strand, within BWI76_RS27840at 5774.303 kb on - strand, within BWI76_RS27840at 5774.305 kb on - strand, within BWI76_RS27840at 5774.343 kb on - strand, within BWI76_RS27840at 5774.461 kb on + strand, within BWI76_RS27840at 5774.773 kb on + strandat 5774.793 kb on - strandat 5774.976 kb on + strand, within BWI76_RS27845at 5775.074 kb on + strand, within BWI76_RS27845at 5775.109 kb on + strand, within BWI76_RS27845at 5775.176 kb on - strand, within BWI76_RS27845at 5775.181 kb on + strand, within BWI76_RS27845at 5775.183 kb on + strand, within BWI76_RS27845at 5775.183 kb on + strand, within BWI76_RS27845at 5775.192 kb on + strand, within BWI76_RS27845at 5775.200 kb on - strand, within BWI76_RS27845at 5775.200 kb on - strand, within BWI76_RS27845at 5775.268 kb on + strand, within BWI76_RS27845at 5775.370 kb on + strand, within BWI76_RS27845at 5775.378 kb on - strand, within BWI76_RS27845at 5775.403 kb on - strand, within BWI76_RS27845at 5775.513 kb on - strand, within BWI76_RS27845at 5776.186 kb on - strandat 5776.308 kb on + strandat 5776.323 kb on + strand, within BWI76_RS27850at 5776.503 kb on + strand, within BWI76_RS27850at 5776.799 kb on + strand, within BWI76_RS27850at 5776.804 kb on + strand, within BWI76_RS27850at 5776.804 kb on + strand, within BWI76_RS27850at 5776.812 kb on - strand, within BWI76_RS27850

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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5,773,817 + -2.7
5,773,898 + BWI76_RS27840 0.13 -1.4
5,773,929 + BWI76_RS27840 0.17 -0.8
5,773,951 - BWI76_RS27840 0.20 +1.6
5,774,008 - BWI76_RS27840 0.27 -0.2
5,774,029 - BWI76_RS27840 0.29 -1.7
5,774,184 - BWI76_RS27840 0.48 -2.7
5,774,195 + BWI76_RS27840 0.49 -0.9
5,774,203 - BWI76_RS27840 0.50 +1.1
5,774,256 + BWI76_RS27840 0.56 -2.6
5,774,297 + BWI76_RS27840 0.61 -3.5
5,774,303 - BWI76_RS27840 0.62 -0.1
5,774,305 - BWI76_RS27840 0.62 -0.3
5,774,343 - BWI76_RS27840 0.67 -2.2
5,774,461 + BWI76_RS27840 0.81 -0.6
5,774,773 + -0.8
5,774,793 - +1.0
5,774,976 + BWI76_RS27845 0.15 -2.2
5,775,074 + BWI76_RS27845 0.23 +0.7
5,775,109 + BWI76_RS27845 0.26 -0.6
5,775,176 - BWI76_RS27845 0.32 +0.3
5,775,181 + BWI76_RS27845 0.32 -4.7
5,775,183 + BWI76_RS27845 0.33 +1.6
5,775,183 + BWI76_RS27845 0.33 +0.5
5,775,192 + BWI76_RS27845 0.33 -1.4
5,775,200 - BWI76_RS27845 0.34 -0.9
5,775,200 - BWI76_RS27845 0.34 +0.3
5,775,268 + BWI76_RS27845 0.40 -1.1
5,775,370 + BWI76_RS27845 0.48 +0.1
5,775,378 - BWI76_RS27845 0.49 -1.7
5,775,403 - BWI76_RS27845 0.51 -2.4
5,775,513 - BWI76_RS27845 0.60 -1.1
5,776,186 - -0.4
5,776,308 + -0.6
5,776,323 + BWI76_RS27850 0.10 -3.9
5,776,503 + BWI76_RS27850 0.30 +1.2
5,776,799 + BWI76_RS27850 0.62 -2.5
5,776,804 + BWI76_RS27850 0.62 -0.6
5,776,804 + BWI76_RS27850 0.62 -2.7
5,776,812 - BWI76_RS27850 0.63 -0.2

Or see this region's nucleotide sequence