Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS27290 and BWI76_RS27295 are separated by 111 nucleotides BWI76_RS27295 and BWI76_RS27300 overlap by 4 nucleotides
BWI76_RS27290: BWI76_RS27290 - hypothetical protein, at 5,664,088 to 5,665,050
_RS27290
BWI76_RS27295: BWI76_RS27295 - putative lipopolysaccharide heptosyltransferase III, at 5,665,162 to 5,666,238
_RS27295
BWI76_RS27300: BWI76_RS27300 - glucuronic acid transferase, at 5,666,235 to 5,667,362
_RS27300
Position (kb) 5665
5666
5667 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 5664.221 kb on - strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.223 kb on + strand, within BWI76_RS27290 at 5664.237 kb on + strand, within BWI76_RS27290 at 5664.238 kb on - strand, within BWI76_RS27290 at 5664.242 kb on + strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.245 kb on - strand, within BWI76_RS27290 at 5664.260 kb on - strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.269 kb on + strand, within BWI76_RS27290 at 5664.277 kb on - strand, within BWI76_RS27290 at 5664.380 kb on + strand, within BWI76_RS27290 at 5664.388 kb on - strand, within BWI76_RS27290 at 5664.694 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand, within BWI76_RS27290 at 5664.744 kb on - strand at 5664.802 kb on + strand, within BWI76_RS27290 at 5664.802 kb on + strand, within BWI76_RS27290 at 5665.002 kb on + strand at 5665.078 kb on + strand at 5665.589 kb on + strand, within BWI76_RS27295
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 5,664,221 - BWI76_RS27290 0.14 -3.4 5,664,223 + BWI76_RS27290 0.14 -2.5 5,664,223 + BWI76_RS27290 0.14 -2.4 5,664,237 + BWI76_RS27290 0.15 -0.1 5,664,238 - BWI76_RS27290 0.16 -0.3 5,664,242 + BWI76_RS27290 0.16 -0.4 5,664,245 - BWI76_RS27290 0.16 -1.6 5,664,245 - BWI76_RS27290 0.16 -4.4 5,664,260 - BWI76_RS27290 0.18 -0.1 5,664,269 + BWI76_RS27290 0.19 +1.0 5,664,269 + BWI76_RS27290 0.19 -0.7 5,664,277 - BWI76_RS27290 0.20 -0.2 5,664,380 + BWI76_RS27290 0.30 -2.0 5,664,388 - BWI76_RS27290 0.31 +1.0 5,664,694 - BWI76_RS27290 0.63 -1.0 5,664,744 - BWI76_RS27290 0.68 +0.3 5,664,744 - +0.2 5,664,802 + BWI76_RS27290 0.74 -0.4 5,664,802 + BWI76_RS27290 0.74 +0.6 5,665,002 + -0.1 5,665,078 + -0.8 5,665,589 + BWI76_RS27295 0.40 +1.2
Or see this region's nucleotide sequence