Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS26965

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS26960 and BWI76_RS26965 are separated by 50 nucleotidesBWI76_RS26965 and BWI76_RS26970 are separated by 441 nucleotides BWI76_RS26960: BWI76_RS26960 - bifunctional glyoxylate/hydroxypyruvate reductase B, at 5,592,785 to 5,593,756 _RS26960 BWI76_RS26965: BWI76_RS26965 - hypothetical protein, at 5,593,807 to 5,594,517 _RS26965 BWI76_RS26970: BWI76_RS26970 - aromatic acid/H+ symport family MFS transporter, at 5,594,959 to 5,596,317 _RS26970 Position (kb) 5593 5594 5595Strain fitness (log2 ratio) -3 -2 -1 0 1at 5593.068 kb on + strand, within BWI76_RS26960at 5593.162 kb on + strand, within BWI76_RS26960at 5593.342 kb on + strand, within BWI76_RS26960at 5593.406 kb on - strand, within BWI76_RS26960at 5593.406 kb on - strand, within BWI76_RS26960at 5593.655 kb on + strand, within BWI76_RS26960at 5593.663 kb on - strandat 5593.664 kb on + strandat 5593.724 kb on + strandat 5593.777 kb on + strandat 5593.785 kb on - strandat 5593.785 kb on - strandat 5593.806 kb on - strandat 5593.840 kb on - strandat 5594.199 kb on + strand, within BWI76_RS26965at 5594.199 kb on + strand, within BWI76_RS26965at 5594.245 kb on - strand, within BWI76_RS26965at 5594.274 kb on + strand, within BWI76_RS26965at 5594.380 kb on - strand, within BWI76_RS26965at 5594.572 kb on - strandat 5594.574 kb on + strandat 5594.582 kb on - strandat 5594.582 kb on - strandat 5594.582 kb on - strandat 5594.602 kb on - strandat 5594.663 kb on + strandat 5594.675 kb on + strandat 5595.095 kb on + strand, within BWI76_RS26970at 5595.103 kb on - strand, within BWI76_RS26970at 5595.103 kb on - strand, within BWI76_RS26970at 5595.295 kb on - strand, within BWI76_RS26970at 5595.295 kb on - strand, within BWI76_RS26970at 5595.323 kb on + strand, within BWI76_RS26970at 5595.414 kb on - strand, within BWI76_RS26970at 5595.434 kb on + strand, within BWI76_RS26970

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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5,593,068 + BWI76_RS26960 0.29 -0.3
5,593,162 + BWI76_RS26960 0.39 +0.2
5,593,342 + BWI76_RS26960 0.57 +1.6
5,593,406 - BWI76_RS26960 0.64 +1.1
5,593,406 - BWI76_RS26960 0.64 +1.0
5,593,655 + BWI76_RS26960 0.90 -0.1
5,593,663 - +0.4
5,593,664 + +0.2
5,593,724 + +0.6
5,593,777 + -0.9
5,593,785 - -3.0
5,593,785 - +0.8
5,593,806 - +0.2
5,593,840 - +0.3
5,594,199 + BWI76_RS26965 0.55 -0.7
5,594,199 + BWI76_RS26965 0.55 +0.3
5,594,245 - BWI76_RS26965 0.62 -0.9
5,594,274 + BWI76_RS26965 0.66 -2.4
5,594,380 - BWI76_RS26965 0.81 +0.9
5,594,572 - -0.2
5,594,574 + -1.4
5,594,582 - +0.5
5,594,582 - -0.1
5,594,582 - -1.1
5,594,602 - +0.7
5,594,663 + -2.0
5,594,675 + +0.6
5,595,095 + BWI76_RS26970 0.10 -1.1
5,595,103 - BWI76_RS26970 0.11 -0.6
5,595,103 - BWI76_RS26970 0.11 +1.1
5,595,295 - BWI76_RS26970 0.25 +0.0
5,595,295 - BWI76_RS26970 0.25 -2.2
5,595,323 + BWI76_RS26970 0.27 +0.5
5,595,414 - BWI76_RS26970 0.33 -0.8
5,595,434 + BWI76_RS26970 0.35 -2.2

Or see this region's nucleotide sequence