Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS26800 and BWI76_RS26805 overlap by 4 nucleotides BWI76_RS26805 and BWI76_RS26810 overlap by 4 nucleotides
BWI76_RS26800: BWI76_RS26800 - cellulose biosynthesis protein BcsE, at 5,557,019 to 5,558,575
_RS26800
BWI76_RS26805: BWI76_RS26805 - cellulose biosynthesis protein BcsF, at 5,558,572 to 5,558,769
_RS26805
BWI76_RS26810: BWI76_RS26810 - cellulose biosynthesis protein BcsG, at 5,558,766 to 5,560,442
_RS26810
Position (kb) 5558
5559 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 5557.575 kb on + strand, within BWI76_RS26800 at 5557.583 kb on - strand, within BWI76_RS26800 at 5557.583 kb on - strand, within BWI76_RS26800 at 5557.598 kb on - strand, within BWI76_RS26800 at 5557.637 kb on - strand, within BWI76_RS26800 at 5557.645 kb on + strand, within BWI76_RS26800 at 5557.674 kb on + strand, within BWI76_RS26800 at 5557.688 kb on + strand, within BWI76_RS26800 at 5557.709 kb on + strand, within BWI76_RS26800 at 5557.716 kb on - strand, within BWI76_RS26800 at 5557.735 kb on + strand, within BWI76_RS26800 at 5557.747 kb on + strand, within BWI76_RS26800 at 5557.993 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.006 kb on - strand, within BWI76_RS26800 at 5558.222 kb on - strand, within BWI76_RS26800 at 5558.226 kb on + strand at 5558.236 kb on + strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.244 kb on - strand, within BWI76_RS26800 at 5558.293 kb on + strand, within BWI76_RS26800 at 5558.318 kb on + strand, within BWI76_RS26800 at 5558.326 kb on - strand, within BWI76_RS26800 at 5558.326 kb on - strand, within BWI76_RS26800 at 5558.556 kb on - strand at 5558.610 kb on - strand, within BWI76_RS26805 at 5558.625 kb on - strand, within BWI76_RS26805 at 5558.675 kb on + strand, within BWI76_RS26805 at 5558.727 kb on + strand, within BWI76_RS26805 at 5558.869 kb on + strand at 5558.942 kb on + strand, within BWI76_RS26810 at 5558.942 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.986 kb on + strand, within BWI76_RS26810 at 5558.994 kb on - strand, within BWI76_RS26810 at 5559.397 kb on + strand, within BWI76_RS26810 at 5559.405 kb on - strand, within BWI76_RS26810 at 5559.454 kb on + strand, within BWI76_RS26810 at 5559.497 kb on + strand, within BWI76_RS26810 at 5559.722 kb on + strand, within BWI76_RS26810
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 5,557,575 + BWI76_RS26800 0.36 -0.8 5,557,583 - BWI76_RS26800 0.36 -2.4 5,557,583 - BWI76_RS26800 0.36 +0.8 5,557,598 - BWI76_RS26800 0.37 -5.3 5,557,637 - BWI76_RS26800 0.40 -3.5 5,557,645 + BWI76_RS26800 0.40 -1.2 5,557,674 + BWI76_RS26800 0.42 -0.9 5,557,688 + BWI76_RS26800 0.43 +0.7 5,557,709 + BWI76_RS26800 0.44 -1.5 5,557,716 - BWI76_RS26800 0.45 -0.6 5,557,735 + BWI76_RS26800 0.46 -0.7 5,557,747 + BWI76_RS26800 0.47 -0.2 5,557,993 - BWI76_RS26800 0.63 -0.5 5,558,006 - BWI76_RS26800 0.63 -3.1 5,558,006 - BWI76_RS26800 0.63 -1.2 5,558,006 - BWI76_RS26800 0.63 -2.0 5,558,222 - BWI76_RS26800 0.77 -1.1 5,558,226 + -0.7 5,558,236 + BWI76_RS26800 0.78 -0.3 5,558,244 - BWI76_RS26800 0.79 -1.7 5,558,244 - BWI76_RS26800 0.79 -1.3 5,558,244 - BWI76_RS26800 0.79 +2.3 5,558,244 - BWI76_RS26800 0.79 -0.7 5,558,244 - BWI76_RS26800 0.79 +1.1 5,558,293 + BWI76_RS26800 0.82 -5.1 5,558,318 + BWI76_RS26800 0.83 -1.4 5,558,326 - BWI76_RS26800 0.84 -0.2 5,558,326 - BWI76_RS26800 0.84 +0.3 5,558,556 - +0.5 5,558,610 - BWI76_RS26805 0.19 -2.7 5,558,625 - BWI76_RS26805 0.27 -1.9 5,558,675 + BWI76_RS26805 0.52 -3.1 5,558,727 + BWI76_RS26805 0.78 -3.2 5,558,869 + -1.6 5,558,942 + BWI76_RS26810 0.10 +0.1 5,558,942 + BWI76_RS26810 0.10 -0.8 5,558,986 + BWI76_RS26810 0.13 -1.9 5,558,986 + BWI76_RS26810 0.13 -0.9 5,558,986 + BWI76_RS26810 0.13 -3.8 5,558,994 - BWI76_RS26810 0.14 +2.1 5,559,397 + BWI76_RS26810 0.38 -0.1 5,559,405 - BWI76_RS26810 0.38 -0.0 5,559,454 + BWI76_RS26810 0.41 -0.9 5,559,497 + BWI76_RS26810 0.44 +0.5 5,559,722 + BWI76_RS26810 0.57 -0.4
Or see this region's nucleotide sequence