Strain Fitness in Klebsiella michiganensis M5al

Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS21830

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	K. M5a1 KLEB26 MOI 0.1
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4,558,661	+			-4.6
4,558,664	-			-2.3
4,558,669	-			-3.2
4,558,680	-			-0.3
4,558,696	+			-1.2
4,558,722	-			-3.2
4,558,732	-			-1.7
4,558,742	-			-3.7
4,558,767	+			-2.2
4,558,767	+			-0.9
4,558,767	+			-4.3
4,558,767	+			-1.1
4,558,775	-			-1.1
4,558,775	-			-0.4
4,558,777	+			-1.0
4,558,777	+			-1.2
4,558,780	-			-0.7
4,558,782	+			-2.5
4,558,782	+			-2.0
4,558,782	+			-0.3
4,558,782	+			-0.4
4,558,782	+			-4.3
4,558,782	+			-2.4
4,558,782	+			-2.0
4,558,782	+			-2.9
4,558,782	+			-2.1
4,558,782	+			-1.5
4,558,782	+			-0.2
4,558,787	+			+0.0
4,558,787	+			-2.9
4,558,787	+			-0.7
4,558,789	-			-0.2
4,558,790	-			-2.8
4,558,790	-			+1.4
4,558,790	-			-1.3
4,558,790	-			-1.8
4,558,790	-			-3.2
4,558,790	-			+0.0
4,558,790	-			-2.8
4,558,790	-			+1.1
4,558,790	-			-1.7
4,558,790	-			-3.3
4,558,790	-			-1.3
4,558,790	-			-0.6
4,558,795	-			-1.2
4,558,795	-			-0.1
4,558,795	-			-0.5
4,558,797	+			-0.8
4,558,797	+			+2.4
4,558,805	-			-2.6
4,558,808	+			-1.1
4,558,816	-			-0.4
4,558,816	-			-0.4
4,558,816	-			-2.8
4,558,816	-			-2.7
4,558,828	-			+1.0
4,558,837	-			-2.7
4,558,842	+			-2.6
4,558,856	-			-2.6
4,558,856	-			+0.7
4,558,886	-	BWI76_RS21820	0.13	-3.9
4,558,886	-	BWI76_RS21820	0.13	+0.1
4,558,886	-	BWI76_RS21820	0.13	-2.8
4,558,886	-	BWI76_RS21820	0.13	-3.7
4,558,886	-			-0.2
4,558,886	-	BWI76_RS21820	0.13	-1.8
4,558,886	-	BWI76_RS21820	0.13	-1.8
4,558,914	-	BWI76_RS21820	0.24	-2.6
4,558,920	-	BWI76_RS21820	0.26	+0.0
4,558,947	-	BWI76_RS21820	0.36	-0.2
4,558,947	-	BWI76_RS21820	0.36	-1.1
4,558,977	-	BWI76_RS21820	0.48	-1.2
4,559,029	-	BWI76_RS21820	0.67	-1.5
4,559,035	-	BWI76_RS21820	0.69	-0.2
4,559,039	-	BWI76_RS21820	0.71	-2.7
4,559,205	-			-1.3
4,559,216	-			-0.9
4,559,236	-			-3.2
4,559,236	-			-0.0
4,559,259	-			+1.6
4,559,314	+			-0.6
4,559,316	-			-1.1
4,559,322	-			-0.2
4,559,322	-			-1.0
4,559,322	-			+0.3
4,559,322	-			+0.3
4,559,322	-			-1.4
4,559,322	-			-1.6
4,559,322	-			+0.9
4,559,322	-			-0.6
4,559,323	+			-1.3
4,559,327	-			-0.2
4,559,332	-			-1.0
4,559,332	-			-0.1
4,559,340	-			-2.3
4,559,409	-	BWI76_RS21825	0.18	-3.8
4,559,427	-	BWI76_RS21825	0.24	-3.3
4,559,427	-	BWI76_RS21825	0.24	+0.0
4,559,429	-	BWI76_RS21825	0.25	-2.7
4,559,435	-	BWI76_RS21825	0.27	-2.1
4,559,443	-	BWI76_RS21825	0.30	-2.5
4,559,450	-	BWI76_RS21825	0.32	-4.4
4,559,450	-	BWI76_RS21825	0.32	-3.9
4,559,450	-	BWI76_RS21825	0.32	-1.4
4,559,450	-	BWI76_RS21825	0.32	-3.2
4,559,464	+	BWI76_RS21825	0.37	+2.6
4,559,465	-	BWI76_RS21825	0.37	-2.8
4,559,471	-	BWI76_RS21825	0.39	-0.6
4,559,477	-	BWI76_RS21825	0.41	-0.0
4,559,478	-	BWI76_RS21825	0.41	+0.4
4,559,478	-	BWI76_RS21825	0.41	-2.1
4,559,478	-	BWI76_RS21825	0.41	-3.4
4,559,484	-	BWI76_RS21825	0.43	-0.6
4,559,484	-	BWI76_RS21825	0.43	-1.7
4,559,611	-	BWI76_RS21825	0.86	+2.1
4,559,613	-	BWI76_RS21825	0.86	-1.1
4,559,613	-	BWI76_RS21825	0.86	-3.4
4,559,615	-	BWI76_RS21825	0.87	+0.0
4,559,619	-	BWI76_RS21825	0.88	+1.3
4,559,665	-			-0.9
4,559,687	+			+0.8
4,559,687	+			-0.7
4,559,695	-			-3.7
4,559,736	-			-2.3
4,559,746	+			+0.0
4,559,747	+			+0.8
4,559,764	-			-2.5
4,559,764	-			-2.6
4,559,789	-			-3.0
4,559,848	+			-1.6
4,559,871	-	BWI76_RS21830	0.10	-3.9
4,559,872	+			-0.8
4,559,883	-	BWI76_RS21830	0.11	-3.6
4,559,912	-	BWI76_RS21830	0.12	-2.5
4,559,918	+	BWI76_RS21830	0.13	-4.6
4,559,918	+	BWI76_RS21830	0.13	-1.8
4,559,918	+	BWI76_RS21830	0.13	-4.1
4,559,918	+	BWI76_RS21830	0.13	+0.3
4,559,918	+	BWI76_RS21830	0.13	-0.4
4,559,918	+	BWI76_RS21830	0.13	+0.5
4,559,919	-	BWI76_RS21830	0.13	-1.0
4,559,926	-	BWI76_RS21830	0.13	+0.4
4,559,926	-	BWI76_RS21830	0.13	-3.4
4,559,926	-	BWI76_RS21830	0.13	-4.2
4,559,928	+	BWI76_RS21830	0.13	-3.5
4,559,935	-	BWI76_RS21830	0.13	-4.1
4,559,938	+	BWI76_RS21830	0.13	-1.6
4,559,940	+	BWI76_RS21830	0.14	-0.6
4,559,940	+	BWI76_RS21830	0.14	+0.6
4,559,940	-	BWI76_RS21830	0.14	-2.3
4,559,948	-	BWI76_RS21830	0.14	+0.6
4,559,983	+	BWI76_RS21830	0.16	-1.2
4,559,987	+	BWI76_RS21830	0.16	+0.7
4,559,988	+	BWI76_RS21830	0.16	-1.5
4,559,994	+	BWI76_RS21830	0.16	-1.9
4,560,002	-	BWI76_RS21830	0.16	-3.2
4,560,002	-	BWI76_RS21830	0.16	-0.2
4,560,002	-	BWI76_RS21830	0.16	-2.9
4,560,013	-	BWI76_RS21830	0.17	+0.9
4,560,032	-	BWI76_RS21830	0.18	-2.9
4,560,060	+	BWI76_RS21830	0.19	+0.8
4,560,063	+	BWI76_RS21830	0.19	-2.2
4,560,073	-	BWI76_RS21830	0.20	-2.1
4,560,080	-	BWI76_RS21830	0.20	-2.1
4,560,090	+	BWI76_RS21830	0.21	-0.4
4,560,098	-	BWI76_RS21830	0.21	-2.6
4,560,101	+	BWI76_RS21830	0.21	-1.6
4,560,109	-	BWI76_RS21830	0.21	-0.5
4,560,109	-	BWI76_RS21830	0.21	-1.9
4,560,115	-	BWI76_RS21830	0.22	-2.6
4,560,130	-	BWI76_RS21830	0.22	-4.1
4,560,131	+	BWI76_RS21830	0.23	-1.5
4,560,139	-	BWI76_RS21830	0.23	-4.1
4,560,174	+	BWI76_RS21830	0.25	-4.2
4,560,179	+	BWI76_RS21830	0.25	+1.0
4,560,179	+			-0.6
4,560,182	-	BWI76_RS21830	0.25	-4.7
4,560,187	-	BWI76_RS21830	0.25	+0.7
4,560,187	-	BWI76_RS21830	0.25	-2.3
4,560,238	-	BWI76_RS21830	0.28	-2.3
4,560,271	-	BWI76_RS21830	0.29	-2.9
4,560,338	-	BWI76_RS21830	0.32	-1.7
4,560,338	-	BWI76_RS21830	0.32	-2.9
4,560,338	-	BWI76_RS21830	0.32	-2.0
4,560,340	-	BWI76_RS21830	0.32	-1.5
4,560,403	-	BWI76_RS21830	0.35	+2.0
4,560,419	+	BWI76_RS21830	0.36	-0.8
4,560,475	-			+0.4
4,560,477	+			-1.0
4,560,562	+	BWI76_RS21830	0.43	-0.3
4,560,566	-	BWI76_RS21830	0.43	-2.2
4,560,636	+	BWI76_RS21830	0.46	-2.5
4,560,688	-	BWI76_RS21830	0.49	-1.6
4,560,735	+	BWI76_RS21830	0.51	-0.2
4,560,759	+	BWI76_RS21830	0.52	-1.0
4,560,800	-	BWI76_RS21830	0.54	-1.1
4,560,813	-	BWI76_RS21830	0.54	-3.5
4,560,815	+	BWI76_RS21830	0.55	-1.7
4,560,829	+	BWI76_RS21830	0.55	+0.2
4,560,834	+	BWI76_RS21830	0.55	-0.1
4,560,842	-	BWI76_RS21830	0.56	-0.4
4,560,848	+	BWI76_RS21830	0.56	-2.3
4,560,866	-	BWI76_RS21830	0.57	-1.1
4,560,868	+	BWI76_RS21830	0.57	-2.7
4,560,868	+	BWI76_RS21830	0.57	-0.2
4,560,868	+	BWI76_RS21830	0.57	-0.4
4,560,877	-	BWI76_RS21830	0.57	-0.9
4,560,887	+	BWI76_RS21830	0.58	-4.0
4,560,895	-	BWI76_RS21830	0.58	-4.2
4,560,895	-	BWI76_RS21830	0.58	+0.4
4,560,948	-	BWI76_RS21830	0.61	-0.1
4,560,956	+	BWI76_RS21830	0.61	-0.7
4,560,998	+	BWI76_RS21830	0.63	-3.2
4,561,056	+	BWI76_RS21830	0.66	-3.3
4,561,064	-	BWI76_RS21830	0.66	-0.3
4,561,083	+	BWI76_RS21830	0.67	-1.2
4,561,113	+	BWI76_RS21830	0.68	-4.4
4,561,126	-	BWI76_RS21830	0.69	-1.8
4,561,126	-	BWI76_RS21830	0.69	-0.8
4,561,126	-	BWI76_RS21830	0.69	-3.2
4,561,126	-	BWI76_RS21830	0.69	+0.7
4,561,138	+	BWI76_RS21830	0.70	-2.0
4,561,138	+	BWI76_RS21830	0.70	-0.9
4,561,146	-	BWI76_RS21830	0.70	-2.0
4,561,146	-	BWI76_RS21830	0.70	-1.7
4,561,146	-	BWI76_RS21830	0.70	-3.2
4,561,157	+	BWI76_RS21830	0.71	-2.9
4,561,186	+	BWI76_RS21830	0.72	-3.8
4,561,260	-	BWI76_RS21830	0.75	-0.7
4,561,370	+	BWI76_RS21830	0.81	-1.0
4,561,378	-	BWI76_RS21830	0.81	-0.1
4,561,515	-	BWI76_RS21830	0.87	-0.4
4,561,573	+			-1.8
4,561,591	-			-2.4
4,561,608	-			-4.5
4,561,608	-			-1.5
4,561,704	+			-0.3
4,561,712	-			-2.7
4,561,722	-			-2.2
4,561,900	-			-2.0
4,561,979	-	BWI76_RS21835	0.16	-0.8
4,562,148	-	BWI76_RS21835	0.31	-0.4
4,562,353	-	BWI76_RS21835	0.49	-0.6
4,562,358	-	BWI76_RS21835	0.49	-2.2
4,562,577	+	BWI76_RS21835	0.68	-0.4
4,562,577	+	BWI76_RS21835	0.68	-0.1
4,562,582	+	BWI76_RS21835	0.69	-2.2
4,562,585	-	BWI76_RS21835	0.69	-0.6
4,562,590	-	BWI76_RS21835	0.70	-1.0
4,562,590	-	BWI76_RS21835	0.70	-0.2
4,562,717	+	BWI76_RS21835	0.81	-2.2
4,562,725	-	BWI76_RS21835	0.81	+0.7
4,562,725	-	BWI76_RS21835	0.81	-0.7
4,562,735	+	BWI76_RS21835	0.82	-2.8

Or see this region's nucleotide sequence