Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20835

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20830 and BWI76_RS20835 are separated by 289 nucleotidesBWI76_RS20835 and BWI76_RS20840 overlap by 32 nucleotides BWI76_RS20830: BWI76_RS20830 - bifunctional malic enzyme oxidoreductase/phosphotransacetylase, at 4,351,514 to 4,353,793 _RS20830 BWI76_RS20835: BWI76_RS20835 - transketolase, at 4,354,083 to 4,356,077 _RS20835 BWI76_RS20840: BWI76_RS20840 - hypothetical protein, at 4,356,046 to 4,357,113 _RS20840 Position (kb) 4354 4355 4356 4357Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4353.310 kb on - strand, within BWI76_RS20830at 4353.401 kb on + strand, within BWI76_RS20830at 4353.638 kb on - strandat 4353.847 kb on - strandat 4353.856 kb on + strandat 4353.865 kb on - strandat 4353.905 kb on - strandat 4354.263 kb on - strandat 4354.287 kb on - strand, within BWI76_RS20835at 4354.289 kb on + strand, within BWI76_RS20835at 4354.289 kb on + strand, within BWI76_RS20835at 4354.465 kb on - strand, within BWI76_RS20835at 4354.532 kb on - strand, within BWI76_RS20835at 4354.602 kb on - strand, within BWI76_RS20835at 4354.602 kb on - strand, within BWI76_RS20835at 4354.656 kb on + strand, within BWI76_RS20835at 4354.793 kb on - strand, within BWI76_RS20835at 4355.025 kb on - strand, within BWI76_RS20835at 4355.134 kb on - strand, within BWI76_RS20835at 4355.239 kb on - strand, within BWI76_RS20835at 4355.378 kb on - strand, within BWI76_RS20835at 4355.450 kb on + strand, within BWI76_RS20835at 4355.603 kb on + strand, within BWI76_RS20835at 4355.803 kb on - strand, within BWI76_RS20835at 4355.803 kb on - strand, within BWI76_RS20835at 4355.858 kb on - strand, within BWI76_RS20835at 4356.071 kb on - strandat 4356.080 kb on - strandat 4356.279 kb on + strand, within BWI76_RS20840at 4356.306 kb on + strand, within BWI76_RS20840at 4356.337 kb on - strand, within BWI76_RS20840at 4356.674 kb on + strand, within BWI76_RS20840at 4356.719 kb on + strand, within BWI76_RS20840at 4356.742 kb on - strand, within BWI76_RS20840at 4356.930 kb on + strand, within BWI76_RS20840

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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4,353,310 - BWI76_RS20830 0.79 -0.5
4,353,401 + BWI76_RS20830 0.83 -0.1
4,353,638 - -0.1
4,353,847 - +0.3
4,353,856 + +1.4
4,353,865 - -0.4
4,353,905 - -2.3
4,354,263 - -0.7
4,354,287 - BWI76_RS20835 0.10 +1.0
4,354,289 + BWI76_RS20835 0.10 +0.2
4,354,289 + BWI76_RS20835 0.10 +1.0
4,354,465 - BWI76_RS20835 0.19 +0.1
4,354,532 - BWI76_RS20835 0.23 -4.6
4,354,602 - BWI76_RS20835 0.26 -0.9
4,354,602 - BWI76_RS20835 0.26 -1.4
4,354,656 + BWI76_RS20835 0.29 -0.7
4,354,793 - BWI76_RS20835 0.36 -2.9
4,355,025 - BWI76_RS20835 0.47 +0.5
4,355,134 - BWI76_RS20835 0.53 -1.5
4,355,239 - BWI76_RS20835 0.58 -0.1
4,355,378 - BWI76_RS20835 0.65 -0.1
4,355,450 + BWI76_RS20835 0.69 +1.0
4,355,603 + BWI76_RS20835 0.76 -1.8
4,355,803 - BWI76_RS20835 0.86 -1.2
4,355,803 - BWI76_RS20835 0.86 -3.2
4,355,858 - BWI76_RS20835 0.89 -0.8
4,356,071 - -2.4
4,356,080 - -2.2
4,356,279 + BWI76_RS20840 0.22 +0.0
4,356,306 + BWI76_RS20840 0.24 -2.6
4,356,337 - BWI76_RS20840 0.27 +0.2
4,356,674 + BWI76_RS20840 0.59 +1.0
4,356,719 + BWI76_RS20840 0.63 +0.1
4,356,742 - BWI76_RS20840 0.65 -2.9
4,356,930 + BWI76_RS20840 0.83 -0.6

Or see this region's nucleotide sequence