Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS20520

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS20515 and BWI76_RS20520 overlap by 4 nucleotidesBWI76_RS20520 and BWI76_RS20525 are separated by 176 nucleotides BWI76_RS20515: BWI76_RS20515 - ion channel protein, at 4,296,297 to 4,297,532 _RS20515 BWI76_RS20520: BWI76_RS20520 - indolepyruvate decarboxylase, at 4,297,529 to 4,299,190 _RS20520 BWI76_RS20525: BWI76_RS20525 - glyceraldehyde 3-phosphate reductase, at 4,299,367 to 4,300,359 _RS20525 Position (kb) 4297 4298 4299 4300Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4296.637 kb on + strandat 4296.645 kb on - strand, within BWI76_RS20515at 4296.779 kb on - strand, within BWI76_RS20515at 4296.955 kb on - strand, within BWI76_RS20515at 4297.144 kb on - strand, within BWI76_RS20515at 4297.176 kb on - strand, within BWI76_RS20515at 4297.311 kb on - strand, within BWI76_RS20515at 4297.557 kb on - strandat 4297.561 kb on + strandat 4297.626 kb on - strandat 4297.842 kb on - strand, within BWI76_RS20520at 4297.905 kb on + strand, within BWI76_RS20520at 4298.009 kb on - strand, within BWI76_RS20520at 4298.265 kb on - strand, within BWI76_RS20520at 4298.302 kb on + strand, within BWI76_RS20520at 4298.302 kb on + strand, within BWI76_RS20520at 4298.629 kb on + strand, within BWI76_RS20520at 4298.672 kb on - strand, within BWI76_RS20520at 4298.885 kb on - strand, within BWI76_RS20520at 4298.905 kb on - strand, within BWI76_RS20520at 4298.914 kb on - strand, within BWI76_RS20520at 4299.045 kb on - strandat 4299.245 kb on + strandat 4299.253 kb on - strandat 4299.253 kb on - strandat 4299.253 kb on - strandat 4299.386 kb on - strandat 4299.756 kb on - strand, within BWI76_RS20525at 4299.825 kb on + strand, within BWI76_RS20525at 4299.979 kb on - strand, within BWI76_RS20525at 4300.019 kb on + strand, within BWI76_RS20525

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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4,296,637 + -0.1
4,296,645 - BWI76_RS20515 0.28 +0.2
4,296,779 - BWI76_RS20515 0.39 -2.0
4,296,955 - BWI76_RS20515 0.53 +0.4
4,297,144 - BWI76_RS20515 0.69 -1.0
4,297,176 - BWI76_RS20515 0.71 +2.3
4,297,311 - BWI76_RS20515 0.82 +0.1
4,297,557 - -0.2
4,297,561 + +1.2
4,297,626 - +0.1
4,297,842 - BWI76_RS20520 0.19 +0.1
4,297,905 + BWI76_RS20520 0.23 +0.8
4,298,009 - BWI76_RS20520 0.29 -3.0
4,298,265 - BWI76_RS20520 0.44 +0.5
4,298,302 + BWI76_RS20520 0.47 +0.3
4,298,302 + BWI76_RS20520 0.47 +1.7
4,298,629 + BWI76_RS20520 0.66 -0.1
4,298,672 - BWI76_RS20520 0.69 -2.8
4,298,885 - BWI76_RS20520 0.82 -2.5
4,298,905 - BWI76_RS20520 0.83 -2.4
4,298,914 - BWI76_RS20520 0.83 +0.2
4,299,045 - +0.1
4,299,245 + +0.1
4,299,253 - +1.2
4,299,253 - -3.2
4,299,253 - +1.3
4,299,386 - +1.0
4,299,756 - BWI76_RS20525 0.39 -0.2
4,299,825 + BWI76_RS20525 0.46 -3.1
4,299,979 - BWI76_RS20525 0.62 +0.5
4,300,019 + BWI76_RS20525 0.66 -0.9

Or see this region's nucleotide sequence