Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS18995

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 nt BWI76_RS18995: BWI76_RS18995 - NAD-dependent epimerase, at 3,941,100 to 3,942,104 _RS18995 Position (kb) 3941 3942 3943Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 3940.275 kb on - strandat 3940.287 kb on + strandat 3940.348 kb on + strandat 3940.351 kb on - strandat 3940.356 kb on - strandat 3940.383 kb on + strandat 3940.383 kb on + strandat 3940.387 kb on - strandat 3940.391 kb on - strandat 3940.397 kb on - strandat 3940.408 kb on + strandat 3940.409 kb on + strandat 3940.416 kb on - strandat 3940.478 kb on + strandat 3940.486 kb on - strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.514 kb on + strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.522 kb on - strandat 3940.523 kb on - strandat 3940.553 kb on + strandat 3940.571 kb on + strandat 3940.581 kb on + strandat 3940.583 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.586 kb on + strandat 3940.588 kb on + strandat 3940.594 kb on - strandat 3940.594 kb on - strandat 3940.594 kb on - strandat 3940.596 kb on - strandat 3940.605 kb on + strandat 3940.609 kb on + strandat 3940.610 kb on + strandat 3940.617 kb on - strandat 3940.618 kb on - strandat 3940.639 kb on + strandat 3940.850 kb on + strandat 3940.850 kb on + strandat 3940.850 kb on - strandat 3940.857 kb on + strandat 3940.858 kb on - strandat 3940.860 kb on - strandat 3940.881 kb on - strandat 3940.898 kb on - strandat 3940.964 kb on + strandat 3940.972 kb on - strandat 3941.004 kb on + strandat 3941.031 kb on + strandat 3941.039 kb on + strandat 3941.039 kb on - strandat 3941.042 kb on - strandat 3941.071 kb on + strandat 3941.851 kb on + strand, within BWI76_RS18995at 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.079 kb on + strandat 3942.092 kb on + strandat 3942.092 kb on + strandat 3942.092 kb on + strandat 3942.098 kb on + strandat 3942.103 kb on + strandat 3942.103 kb on + strandat 3942.103 kb on + strandat 3942.116 kb on - strandat 3942.117 kb on + strandat 3942.125 kb on + strandat 3942.125 kb on + strandat 3942.133 kb on - strandat 3942.141 kb on + strandat 3942.141 kb on + strandat 3942.219 kb on + strandat 3942.227 kb on - strandat 3942.227 kb on - strandat 3942.304 kb on + strandat 3942.498 kb on + strandat 3942.506 kb on - strandat 3942.508 kb on + strandat 3942.508 kb on + strandat 3942.516 kb on - strandat 3942.576 kb on + strandat 3942.590 kb on - strandat 3942.593 kb on + strandat 3942.614 kb on + strandat 3942.622 kb on - strandat 3942.786 kb on - strandat 3942.789 kb on - strandat 3942.791 kb on - strandat 3942.833 kb on - strandat 3942.857 kb on - strandat 3942.857 kb on - strandat 3942.908 kb on + strandat 3942.910 kb on - strandat 3942.916 kb on - strandat 3942.947 kb on - strandat 3942.966 kb on + strandat 3942.984 kb on - strandat 3942.989 kb on - strandat 3943.047 kb on - strandat 3943.066 kb on - strandat 3943.075 kb on - strandat 3943.088 kb on + strandat 3943.091 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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3,940,275 - +2.6
3,940,287 + +3.0
3,940,348 + +2.0
3,940,351 - -1.8
3,940,356 - +2.8
3,940,383 + -1.4
3,940,383 + +1.4
3,940,387 - +3.7
3,940,391 - -3.1
3,940,397 - +1.7
3,940,408 + -1.6
3,940,409 + -1.3
3,940,416 - -0.3
3,940,478 + +0.4
3,940,486 - +1.3
3,940,514 + -1.3
3,940,514 + +1.8
3,940,514 + -0.1
3,940,514 + +1.6
3,940,522 - +1.1
3,940,522 - +1.1
3,940,522 - +1.3
3,940,522 - +2.0
3,940,523 - +2.3
3,940,553 + +2.0
3,940,571 + +2.6
3,940,581 + +2.8
3,940,583 + -0.6
3,940,586 + -2.0
3,940,586 + -0.2
3,940,586 + +0.1
3,940,586 + +0.6
3,940,588 + +2.1
3,940,594 - -1.9
3,940,594 - +1.1
3,940,594 - +1.5
3,940,596 - +1.7
3,940,605 + +0.3
3,940,609 + +0.8
3,940,610 + +0.0
3,940,617 - +0.8
3,940,618 - -2.5
3,940,639 + -3.0
3,940,850 + +0.0
3,940,850 + -0.8
3,940,850 - -0.3
3,940,857 + -2.9
3,940,858 - -0.8
3,940,860 - +2.3
3,940,881 - +0.3
3,940,898 - +2.0
3,940,964 + +1.5
3,940,972 - +1.3
3,941,004 + +0.5
3,941,031 + +0.5
3,941,039 + +0.8
3,941,039 - +0.0
3,941,042 - +5.0
3,941,071 + +0.7
3,941,851 + BWI76_RS18995 0.75 +1.0
3,942,079 + +0.5
3,942,079 + +0.0
3,942,079 + +1.9
3,942,079 + +0.8
3,942,079 + +2.3
3,942,079 + +0.7
3,942,079 + +2.4
3,942,079 + +1.8
3,942,079 + +2.3
3,942,079 + +2.5
3,942,079 + +1.2
3,942,079 + +2.2
3,942,079 + +2.9
3,942,079 + +2.1
3,942,079 + -0.1
3,942,092 + -3.2
3,942,092 + +2.5
3,942,092 + +1.0
3,942,098 + +0.3
3,942,103 + +1.6
3,942,103 + -2.4
3,942,103 + -2.6
3,942,116 - +0.3
3,942,117 + -0.1
3,942,125 + -0.4
3,942,125 + +1.0
3,942,133 - +1.4
3,942,141 + -0.4
3,942,141 + +2.1
3,942,219 + +1.8
3,942,227 - -0.8
3,942,227 - -1.1
3,942,304 + -0.4
3,942,498 + -0.1
3,942,506 - +0.5
3,942,508 + +0.3
3,942,508 + +0.6
3,942,516 - -1.1
3,942,576 + +1.2
3,942,590 - +1.3
3,942,593 + +1.0
3,942,614 + +3.0
3,942,622 - +2.5
3,942,786 - +1.6
3,942,789 - +1.0
3,942,791 - -1.4
3,942,833 - -0.8
3,942,857 - +1.1
3,942,857 - -1.3
3,942,908 + +0.2
3,942,910 - +0.3
3,942,916 - -0.2
3,942,947 - +0.3
3,942,966 + +1.6
3,942,984 - +0.6
3,942,989 - -0.5
3,943,047 - +0.3
3,943,066 - +1.9
3,943,075 - -1.2
3,943,088 + +0.6
3,943,091 - +1.2

Or see this region's nucleotide sequence