Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS18280 and BWI76_RS18285 are separated by 421 nucleotides BWI76_RS18285 and BWI76_RS18290 are separated by 36 nucleotides BWI76_RS18290 and BWI76_RS18295 are separated by 193 nucleotides
BWI76_RS18280: BWI76_RS18280 - hypothetical protein, at 3,799,449 to 3,800,087
_RS18280
BWI76_RS18285: BWI76_RS18285 - ferritin, at 3,800,509 to 3,801,006
_RS18285
BWI76_RS18290: BWI76_RS18290 - hypothetical protein, at 3,801,043 to 3,801,282
_RS18290
BWI76_RS18295: BWI76_RS18295 - tyrosine transporter TyrP, at 3,801,476 to 3,802,687
_RS18295
Position (kb)
3801
3802 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 3800.096 kb on + strand at 3800.098 kb on + strand at 3800.098 kb on + strand at 3800.098 kb on + strand at 3800.098 kb on + strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.106 kb on - strand at 3800.144 kb on - strand at 3800.234 kb on - strand at 3800.254 kb on - strand at 3800.257 kb on - strand at 3800.257 kb on - strand at 3800.266 kb on + strand at 3800.266 kb on + strand at 3800.266 kb on + strand at 3800.267 kb on - strand at 3800.271 kb on + strand at 3800.272 kb on - strand at 3800.274 kb on - strand at 3800.275 kb on + strand at 3800.275 kb on + strand at 3800.287 kb on - strand at 3800.306 kb on - strand at 3800.306 kb on - strand at 3800.312 kb on + strand at 3800.466 kb on - strand at 3800.481 kb on - strand at 3800.547 kb on + strand at 3800.547 kb on + strand at 3800.547 kb on + strand at 3800.555 kb on - strand at 3800.593 kb on + strand, within BWI76_RS18285 at 3800.601 kb on - strand, within BWI76_RS18285 at 3800.612 kb on + strand, within BWI76_RS18285 at 3800.656 kb on + strand, within BWI76_RS18285 at 3800.660 kb on - strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.663 kb on + strand, within BWI76_RS18285 at 3800.671 kb on - strand, within BWI76_RS18285 at 3800.671 kb on - strand, within BWI76_RS18285 at 3800.699 kb on + strand, within BWI76_RS18285 at 3800.699 kb on + strand, within BWI76_RS18285 at 3800.699 kb on + strand, within BWI76_RS18285 at 3800.707 kb on - strand, within BWI76_RS18285 at 3800.722 kb on + strand, within BWI76_RS18285 at 3800.743 kb on + strand, within BWI76_RS18285 at 3800.743 kb on + strand, within BWI76_RS18285 at 3800.751 kb on - strand, within BWI76_RS18285 at 3800.766 kb on + strand, within BWI76_RS18285 at 3800.766 kb on + strand, within BWI76_RS18285 at 3800.766 kb on + strand, within BWI76_RS18285 at 3800.791 kb on + strand, within BWI76_RS18285 at 3800.815 kb on + strand, within BWI76_RS18285 at 3800.839 kb on + strand, within BWI76_RS18285 at 3800.839 kb on + strand, within BWI76_RS18285 at 3800.871 kb on + strand, within BWI76_RS18285 at 3800.871 kb on + strand, within BWI76_RS18285 at 3800.871 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on + strand, within BWI76_RS18285 at 3800.879 kb on - strand, within BWI76_RS18285 at 3800.879 kb on - strand, within BWI76_RS18285 at 3800.879 kb on - strand, within BWI76_RS18285 at 3800.881 kb on + strand, within BWI76_RS18285 at 3800.887 kb on - strand, within BWI76_RS18285 at 3800.887 kb on - strand, within BWI76_RS18285 at 3800.887 kb on - strand, within BWI76_RS18285 at 3800.889 kb on - strand, within BWI76_RS18285 at 3800.896 kb on + strand, within BWI76_RS18285 at 3800.907 kb on + strand, within BWI76_RS18285 at 3800.915 kb on - strand, within BWI76_RS18285 at 3800.926 kb on + strand, within BWI76_RS18285 at 3800.939 kb on - strand at 3800.990 kb on - strand at 3801.031 kb on - strand at 3801.031 kb on - strand at 3801.031 kb on - strand at 3801.031 kb on - strand at 3801.087 kb on - strand, within BWI76_RS18290 at 3801.087 kb on - strand, within BWI76_RS18290 at 3801.087 kb on - strand, within BWI76_RS18290 at 3801.100 kb on - strand, within BWI76_RS18290 at 3801.129 kb on + strand, within BWI76_RS18290 at 3801.137 kb on - strand, within BWI76_RS18290 at 3801.221 kb on + strand, within BWI76_RS18290 at 3801.221 kb on + strand, within BWI76_RS18290 at 3801.221 kb on + strand, within BWI76_RS18290 at 3801.221 kb on + strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.229 kb on - strand, within BWI76_RS18290 at 3801.250 kb on + strand, within BWI76_RS18290 at 3801.691 kb on + strand, within BWI76_RS18295 at 3801.873 kb on - strand, within BWI76_RS18295 at 3801.888 kb on + strand, within BWI76_RS18295 at 3801.978 kb on - strand, within BWI76_RS18295 at 3802.015 kb on + strand, within BWI76_RS18295 at 3802.208 kb on - strand, within BWI76_RS18295 at 3802.237 kb on + strand, within BWI76_RS18295
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 3,800,096 + +0.0 3,800,098 + -1.4 3,800,098 + +0.3 3,800,098 + +1.9 3,800,098 + +1.0 3,800,106 - +0.8 3,800,106 - -1.2 3,800,106 - +1.1 3,800,106 - -1.8 3,800,106 - +0.2 3,800,106 - -0.1 3,800,106 - +1.9 3,800,144 - +1.2 3,800,234 - +1.4 3,800,254 - +0.9 3,800,257 - +0.6 3,800,257 - -1.7 3,800,266 + -2.1 3,800,266 + +0.8 3,800,266 + +0.7 3,800,267 - +0.1 3,800,271 + -0.1 3,800,272 - +2.6 3,800,274 - +0.3 3,800,275 + -3.2 3,800,275 + -2.5 3,800,287 - -1.8 3,800,306 - +3.1 3,800,306 - -1.0 3,800,312 + -0.7 3,800,466 - +2.0 3,800,481 - -2.5 3,800,547 + +0.2 3,800,547 + +2.1 3,800,547 + -0.1 3,800,555 - -0.8 3,800,593 + BWI76_RS18285 0.17 -2.5 3,800,601 - BWI76_RS18285 0.18 -1.8 3,800,612 + BWI76_RS18285 0.21 +1.0 3,800,656 + BWI76_RS18285 0.30 -1.1 3,800,660 - BWI76_RS18285 0.30 +3.9 3,800,663 + BWI76_RS18285 0.31 +0.3 3,800,663 + BWI76_RS18285 0.31 +1.4 3,800,663 + BWI76_RS18285 0.31 -1.5 3,800,663 + BWI76_RS18285 0.31 -0.3 3,800,663 + BWI76_RS18285 0.31 +0.4 3,800,663 + BWI76_RS18285 0.31 -0.3 3,800,663 + BWI76_RS18285 0.31 -0.3 3,800,663 + BWI76_RS18285 0.31 -2.5 3,800,663 + BWI76_RS18285 0.31 -0.9 3,800,671 - BWI76_RS18285 0.33 +0.2 3,800,671 - BWI76_RS18285 0.33 +0.3 3,800,699 + BWI76_RS18285 0.38 +0.3 3,800,699 + BWI76_RS18285 0.38 -0.0 3,800,699 + BWI76_RS18285 0.38 +2.2 3,800,707 - BWI76_RS18285 0.40 +2.8 3,800,722 + BWI76_RS18285 0.43 +1.4 3,800,743 + BWI76_RS18285 0.47 -0.4 3,800,743 + BWI76_RS18285 0.47 +0.9 3,800,751 - BWI76_RS18285 0.49 +0.9 3,800,766 + BWI76_RS18285 0.52 +0.8 3,800,766 + BWI76_RS18285 0.52 -1.4 3,800,766 + BWI76_RS18285 0.52 -2.5 3,800,791 + BWI76_RS18285 0.57 +1.9 3,800,815 + BWI76_RS18285 0.61 -3.3 3,800,839 + BWI76_RS18285 0.66 +1.0 3,800,839 + BWI76_RS18285 0.66 -0.3 3,800,871 + BWI76_RS18285 0.73 +1.0 3,800,871 + BWI76_RS18285 0.73 -1.2 3,800,871 + BWI76_RS18285 0.73 -0.6 3,800,879 + BWI76_RS18285 0.74 +0.1 3,800,879 + BWI76_RS18285 0.74 +0.7 3,800,879 + BWI76_RS18285 0.74 +0.7 3,800,879 + BWI76_RS18285 0.74 +4.4 3,800,879 + BWI76_RS18285 0.74 +0.6 3,800,879 + BWI76_RS18285 0.74 +0.7 3,800,879 + BWI76_RS18285 0.74 -0.3 3,800,879 - BWI76_RS18285 0.74 -1.4 3,800,879 - BWI76_RS18285 0.74 +1.3 3,800,879 - BWI76_RS18285 0.74 -3.1 3,800,881 + BWI76_RS18285 0.75 +1.0 3,800,887 - BWI76_RS18285 0.76 +0.0 3,800,887 - BWI76_RS18285 0.76 +2.5 3,800,887 - BWI76_RS18285 0.76 -0.7 3,800,889 - BWI76_RS18285 0.76 -1.7 3,800,896 + BWI76_RS18285 0.78 +1.5 3,800,907 + BWI76_RS18285 0.80 +1.8 3,800,915 - BWI76_RS18285 0.82 +1.0 3,800,926 + BWI76_RS18285 0.84 -0.3 3,800,939 - +3.4 3,800,990 - -0.1 3,801,031 - -1.0 3,801,031 - +1.0 3,801,031 - -1.6 3,801,031 - +1.1 3,801,087 - BWI76_RS18290 0.18 +2.8 3,801,087 - BWI76_RS18290 0.18 -0.3 3,801,087 - BWI76_RS18290 0.18 +2.1 3,801,100 - BWI76_RS18290 0.24 -2.5 3,801,129 + BWI76_RS18290 0.36 +2.3 3,801,137 - BWI76_RS18290 0.39 +1.0 3,801,221 + BWI76_RS18290 0.74 +0.0 3,801,221 + BWI76_RS18290 0.74 -1.4 3,801,221 + BWI76_RS18290 0.74 +2.6 3,801,221 + BWI76_RS18290 0.74 +3.0 3,801,229 - BWI76_RS18290 0.78 +1.2 3,801,229 - BWI76_RS18290 0.78 +1.1 3,801,229 - BWI76_RS18290 0.78 -1.6 3,801,229 - BWI76_RS18290 0.78 +0.1 3,801,229 - BWI76_RS18290 0.78 +0.4 3,801,229 - BWI76_RS18290 0.78 +0.9 3,801,229 - BWI76_RS18290 0.78 -1.4 3,801,229 - BWI76_RS18290 0.78 -1.4 3,801,229 - BWI76_RS18290 0.78 +3.0 3,801,250 + BWI76_RS18290 0.86 -1.2 3,801,691 + BWI76_RS18295 0.18 +0.1 3,801,873 - BWI76_RS18295 0.33 -2.8 3,801,888 + BWI76_RS18295 0.34 +1.7 3,801,978 - BWI76_RS18295 0.41 +0.9 3,802,015 + BWI76_RS18295 0.44 +0.9 3,802,208 - BWI76_RS18295 0.60 -2.1 3,802,237 + BWI76_RS18295 0.63 -2.3
Or see this region's nucleotide sequence