Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS15885 and BWI76_RS15890 are separated by 177 nucleotides BWI76_RS15890 and BWI76_RS15895 are separated by 14 nucleotides
BWI76_RS15885: BWI76_RS15885 - putative phage integrase, at 3,295,716 to 3,296,996
_RS15885
BWI76_RS15890: BWI76_RS15890 - Zn-dependent oxidoreductase, at 3,297,174 to 3,298,190
_RS15890
BWI76_RS15895: BWI76_RS15895 - starvation-sensing protein RspA, at 3,298,205 to 3,299,419
_RS15895
Position (kb)
3297
3298
3299 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 3296.176 kb on - strand, within BWI76_RS15885 at 3296.305 kb on - strand, within BWI76_RS15885 at 3296.433 kb on - strand, within BWI76_RS15885 at 3296.434 kb on - strand, within BWI76_RS15885 at 3296.445 kb on - strand, within BWI76_RS15885 at 3296.596 kb on - strand, within BWI76_RS15885 at 3296.677 kb on - strand, within BWI76_RS15885 at 3296.682 kb on - strand, within BWI76_RS15885 at 3296.701 kb on + strand, within BWI76_RS15885 at 3296.708 kb on - strand, within BWI76_RS15885 at 3296.722 kb on + strand at 3296.814 kb on + strand, within BWI76_RS15885 at 3296.818 kb on + strand at 3296.934 kb on - strand at 3297.047 kb on + strand at 3297.047 kb on + strand at 3297.060 kb on - strand at 3297.065 kb on - strand at 3297.079 kb on - strand at 3297.145 kb on + strand at 3297.153 kb on - strand at 3297.157 kb on + strand at 3297.185 kb on - strand at 3297.202 kb on - strand at 3297.235 kb on - strand at 3297.238 kb on + strand at 3297.248 kb on + strand at 3297.268 kb on + strand at 3297.319 kb on + strand, within BWI76_RS15890 at 3297.371 kb on + strand, within BWI76_RS15890 at 3297.400 kb on - strand, within BWI76_RS15890 at 3297.597 kb on - strand, within BWI76_RS15890 at 3297.619 kb on + strand, within BWI76_RS15890 at 3297.637 kb on - strand at 3297.688 kb on + strand, within BWI76_RS15890 at 3297.696 kb on - strand, within BWI76_RS15890 at 3297.875 kb on + strand, within BWI76_RS15890 at 3297.880 kb on + strand, within BWI76_RS15890 at 3297.943 kb on + strand, within BWI76_RS15890 at 3298.219 kb on - strand at 3298.386 kb on - strand, within BWI76_RS15895 at 3298.552 kb on + strand, within BWI76_RS15895 at 3298.728 kb on - strand, within BWI76_RS15895 at 3298.917 kb on + strand, within BWI76_RS15895 at 3299.171 kb on + strand, within BWI76_RS15895
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 3,296,176 - BWI76_RS15885 0.36 +0.6 3,296,305 - BWI76_RS15885 0.46 +0.5 3,296,433 - BWI76_RS15885 0.56 +1.6 3,296,434 - BWI76_RS15885 0.56 +0.3 3,296,445 - BWI76_RS15885 0.57 -0.9 3,296,596 - BWI76_RS15885 0.69 -2.1 3,296,677 - BWI76_RS15885 0.75 +2.7 3,296,682 - BWI76_RS15885 0.75 +0.0 3,296,701 + BWI76_RS15885 0.77 -0.5 3,296,708 - BWI76_RS15885 0.77 +2.2 3,296,722 + -0.5 3,296,814 + BWI76_RS15885 0.86 +0.6 3,296,818 + +0.7 3,296,934 - -2.4 3,297,047 + -1.4 3,297,047 + +1.3 3,297,060 - +1.4 3,297,065 - -1.0 3,297,079 - -1.5 3,297,145 + -2.5 3,297,153 - +0.3 3,297,157 + -1.5 3,297,185 - -0.2 3,297,202 - +0.8 3,297,235 - +0.3 3,297,238 + -0.5 3,297,248 + -1.6 3,297,268 + -0.5 3,297,319 + BWI76_RS15890 0.14 +0.3 3,297,371 + BWI76_RS15890 0.19 +2.3 3,297,400 - BWI76_RS15890 0.22 +1.9 3,297,597 - BWI76_RS15890 0.42 +1.1 3,297,619 + BWI76_RS15890 0.44 +0.9 3,297,637 - +1.3 3,297,688 + BWI76_RS15890 0.51 +1.4 3,297,696 - BWI76_RS15890 0.51 +0.1 3,297,875 + BWI76_RS15890 0.69 +0.3 3,297,880 + BWI76_RS15890 0.69 +1.3 3,297,943 + BWI76_RS15890 0.76 +0.8 3,298,219 - +0.3 3,298,386 - BWI76_RS15895 0.15 +0.6 3,298,552 + BWI76_RS15895 0.29 +0.3 3,298,728 - BWI76_RS15895 0.43 +0.8 3,298,917 + BWI76_RS15895 0.59 +0.4 3,299,171 + BWI76_RS15895 0.80 +0.7
Or see this region's nucleotide sequence