Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS15185

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS15180 and BWI76_RS15185 are separated by 111 nucleotidesBWI76_RS15185 and BWI76_RS15190 are separated by 90 nucleotides BWI76_RS15180: BWI76_RS15180 - altronate oxidoreductase, at 3,181,934 to 3,183,385 _RS15180 BWI76_RS15185: BWI76_RS15185 - N-acetyltransferase, at 3,183,497 to 3,184,027 _RS15185 BWI76_RS15190: BWI76_RS15190 - GGDEF domain-containing protein, at 3,184,118 to 3,185,530 _RS15190 Position (kb) 3183 3184 3185Strain fitness (log2 ratio) -3 -2 -1 0 1at 3182.816 kb on + strand, within BWI76_RS15180at 3182.816 kb on + strand, within BWI76_RS15180at 3183.141 kb on + strandat 3183.141 kb on + strand, within BWI76_RS15180at 3183.345 kb on - strandat 3183.648 kb on + strand, within BWI76_RS15185at 3183.910 kb on + strand, within BWI76_RS15185at 3184.420 kb on + strand, within BWI76_RS15190at 3184.503 kb on - strand, within BWI76_RS15190at 3184.511 kb on + strand, within BWI76_RS15190at 3184.607 kb on + strand, within BWI76_RS15190at 3184.979 kb on - strand, within BWI76_RS15190

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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3,182,816 + BWI76_RS15180 0.61 -0.7
3,182,816 + BWI76_RS15180 0.61 -0.5
3,183,141 + -0.6
3,183,141 + BWI76_RS15180 0.83 -2.8
3,183,345 - +1.5
3,183,648 + BWI76_RS15185 0.28 -0.4
3,183,910 + BWI76_RS15185 0.78 -1.6
3,184,420 + BWI76_RS15190 0.21 +1.2
3,184,503 - BWI76_RS15190 0.27 -0.9
3,184,511 + BWI76_RS15190 0.28 -2.6
3,184,607 + BWI76_RS15190 0.35 -2.1
3,184,979 - BWI76_RS15190 0.61 +0.8

Or see this region's nucleotide sequence