Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS14040

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS14030 and BWI76_RS14035 overlap by 4 nucleotidesBWI76_RS14035 and BWI76_RS14040 overlap by 4 nucleotidesBWI76_RS14040 and BWI76_RS14045 are separated by 324 nucleotides BWI76_RS14030: BWI76_RS14030 - ABC transporter permease, at 2,932,500 to 2,933,240 _RS14030 BWI76_RS14035: BWI76_RS14035 - ABC transporter ATPase, at 2,933,237 to 2,933,965 _RS14035 BWI76_RS14040: BWI76_RS14040 - thiaminase, at 2,933,962 to 2,934,657 _RS14040 BWI76_RS14045: BWI76_RS14045 - oxidoreductase, at 2,934,982 to 2,936,154 _RS14045 Position (kb) 2933 2934 2935Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 2933.013 kb on - strand, within BWI76_RS14030at 2933.034 kb on - strand, within BWI76_RS14030at 2933.228 kb on + strandat 2933.236 kb on - strandat 2933.485 kb on - strand, within BWI76_RS14035at 2933.485 kb on - strand, within BWI76_RS14035at 2933.616 kb on - strand, within BWI76_RS14035at 2933.701 kb on + strand, within BWI76_RS14035at 2933.701 kb on + strand, within BWI76_RS14035at 2933.937 kb on - strandat 2933.994 kb on - strandat 2934.013 kb on - strandat 2934.039 kb on - strand, within BWI76_RS14040at 2934.039 kb on - strand, within BWI76_RS14040at 2934.870 kb on - strandat 2935.033 kb on + strandat 2935.045 kb on - strandat 2935.388 kb on - strand, within BWI76_RS14045

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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2,933,013 - BWI76_RS14030 0.69 -0.2
2,933,034 - BWI76_RS14030 0.72 +0.3
2,933,228 + -0.4
2,933,236 - +0.3
2,933,485 - BWI76_RS14035 0.34 -0.0
2,933,485 - BWI76_RS14035 0.34 -0.0
2,933,616 - BWI76_RS14035 0.52 -0.8
2,933,701 + BWI76_RS14035 0.64 -3.8
2,933,701 + BWI76_RS14035 0.64 +1.1
2,933,937 - -0.4
2,933,994 - -1.9
2,934,013 - -1.3
2,934,039 - BWI76_RS14040 0.11 -0.8
2,934,039 - BWI76_RS14040 0.11 -3.8
2,934,870 - -4.4
2,935,033 + -2.9
2,935,045 - +1.0
2,935,388 - BWI76_RS14045 0.35 -0.8

Or see this region's nucleotide sequence