Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS11720 and BWI76_RS11725 are separated by 285 nucleotides BWI76_RS11725 and BWI76_RS11730 are separated by 168 nucleotides BWI76_RS11730 and BWI76_RS11735 are separated by 53 nucleotides BWI76_RS11735 and BWI76_RS11740 are separated by 12 nucleotides
BWI76_RS11720: BWI76_RS11720 - transcriptional regulator, at 2,466,573 to 2,466,911
_RS11720
BWI76_RS11725: BWI76_RS11725 - PTS sugar transporter subunit IIB, at 2,467,197 to 2,467,517
_RS11725
BWI76_RS11730: BWI76_RS11730 - PTS N,N'-diacetylchitobiose transporter subunit IIC, at 2,467,686 to 2,469,044
_RS11730
BWI76_RS11735: BWI76_RS11735 - PTS N,N'-diacetylchitobiose transporter subunit IIA, at 2,469,098 to 2,469,445
_RS11735
BWI76_RS11740: BWI76_RS11740 - transcriptional regulator ChbR, at 2,469,458 to 2,470,297
_RS11740
Position (kb)
2467
2468
2469
2470 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4
5 at 2466.750 kb on + strand, within BWI76_RS11720 at 2466.894 kb on - strand at 2466.894 kb on - strand at 2466.981 kb on - strand at 2466.983 kb on - strand at 2467.031 kb on - strand at 2467.076 kb on + strand at 2467.088 kb on + strand at 2467.090 kb on + strand at 2467.140 kb on + strand at 2467.140 kb on + strand at 2467.148 kb on - strand at 2467.148 kb on - strand at 2467.148 kb on - strand at 2467.148 kb on - strand at 2467.148 kb on - strand at 2467.148 kb on - strand at 2467.174 kb on - strand at 2467.215 kb on + strand at 2467.220 kb on + strand at 2467.220 kb on + strand at 2467.220 kb on + strand at 2467.225 kb on + strand at 2467.228 kb on - strand at 2467.228 kb on - strand at 2467.228 kb on - strand at 2467.235 kb on + strand, within BWI76_RS11725 at 2467.236 kb on - strand, within BWI76_RS11725 at 2467.238 kb on - strand, within BWI76_RS11725 at 2467.243 kb on - strand, within BWI76_RS11725 at 2467.243 kb on - strand, within BWI76_RS11725 at 2467.246 kb on - strand, within BWI76_RS11725 at 2467.282 kb on + strand, within BWI76_RS11725 at 2467.298 kb on - strand, within BWI76_RS11725 at 2467.319 kb on + strand, within BWI76_RS11725 at 2467.327 kb on - strand, within BWI76_RS11725 at 2467.390 kb on + strand, within BWI76_RS11725 at 2467.440 kb on + strand, within BWI76_RS11725 at 2467.445 kb on + strand, within BWI76_RS11725 at 2467.448 kb on + strand, within BWI76_RS11725 at 2467.572 kb on + strand at 2467.575 kb on + strand at 2467.607 kb on + strand at 2467.636 kb on + strand at 2467.675 kb on + strand at 2467.754 kb on - strand at 2467.765 kb on - strand at 2467.809 kb on - strand at 2467.813 kb on - strand at 2467.884 kb on + strand, within BWI76_RS11730 at 2467.884 kb on + strand, within BWI76_RS11730 at 2467.900 kb on + strand, within BWI76_RS11730 at 2467.900 kb on + strand, within BWI76_RS11730 at 2467.903 kb on - strand, within BWI76_RS11730 at 2467.910 kb on + strand, within BWI76_RS11730 at 2467.910 kb on + strand, within BWI76_RS11730 at 2467.918 kb on + strand, within BWI76_RS11730 at 2467.926 kb on - strand, within BWI76_RS11730 at 2467.926 kb on - strand, within BWI76_RS11730 at 2467.927 kb on - strand, within BWI76_RS11730 at 2467.933 kb on + strand, within BWI76_RS11730 at 2467.937 kb on - strand, within BWI76_RS11730 at 2467.940 kb on + strand, within BWI76_RS11730 at 2467.940 kb on + strand, within BWI76_RS11730 at 2467.941 kb on + strand, within BWI76_RS11730 at 2467.948 kb on - strand, within BWI76_RS11730 at 2467.949 kb on - strand, within BWI76_RS11730 at 2467.949 kb on - strand, within BWI76_RS11730 at 2467.960 kb on + strand, within BWI76_RS11730 at 2467.960 kb on + strand, within BWI76_RS11730 at 2467.960 kb on + strand, within BWI76_RS11730 at 2467.960 kb on + strand, within BWI76_RS11730 at 2467.960 kb on + strand, within BWI76_RS11730 at 2467.988 kb on + strand, within BWI76_RS11730 at 2467.993 kb on + strand, within BWI76_RS11730 at 2467.993 kb on + strand, within BWI76_RS11730 at 2468.001 kb on - strand, within BWI76_RS11730 at 2468.001 kb on - strand, within BWI76_RS11730 at 2468.001 kb on - strand, within BWI76_RS11730 at 2468.004 kb on + strand, within BWI76_RS11730 at 2468.012 kb on + strand, within BWI76_RS11730 at 2468.012 kb on + strand, within BWI76_RS11730 at 2468.012 kb on + strand, within BWI76_RS11730 at 2468.012 kb on + strand, within BWI76_RS11730 at 2468.025 kb on - strand, within BWI76_RS11730 at 2468.025 kb on - strand, within BWI76_RS11730 at 2468.045 kb on - strand, within BWI76_RS11730 at 2468.045 kb on - strand, within BWI76_RS11730 at 2468.063 kb on - strand, within BWI76_RS11730 at 2468.073 kb on - strand, within BWI76_RS11730 at 2468.080 kb on - strand, within BWI76_RS11730 at 2468.090 kb on + strand, within BWI76_RS11730 at 2468.106 kb on + strand, within BWI76_RS11730 at 2468.152 kb on + strand, within BWI76_RS11730 at 2468.152 kb on + strand, within BWI76_RS11730 at 2468.160 kb on - strand, within BWI76_RS11730 at 2468.160 kb on - strand, within BWI76_RS11730 at 2468.265 kb on + strand, within BWI76_RS11730 at 2468.331 kb on - strand, within BWI76_RS11730 at 2468.366 kb on - strand, within BWI76_RS11730 at 2468.379 kb on + strand, within BWI76_RS11730 at 2468.436 kb on - strand, within BWI76_RS11730 at 2468.462 kb on - strand, within BWI76_RS11730 at 2468.636 kb on + strand, within BWI76_RS11730 at 2468.672 kb on + strand, within BWI76_RS11730 at 2468.755 kb on + strand, within BWI76_RS11730 at 2468.808 kb on + strand, within BWI76_RS11730 at 2468.816 kb on - strand, within BWI76_RS11730 at 2468.890 kb on - strand, within BWI76_RS11730 at 2468.989 kb on + strand at 2469.088 kb on - strand at 2469.128 kb on - strand at 2469.162 kb on - strand, within BWI76_RS11735 at 2469.185 kb on - strand at 2469.207 kb on - strand, within BWI76_RS11735 at 2469.370 kb on + strand, within BWI76_RS11735 at 2469.487 kb on + strand at 2469.487 kb on + strand at 2469.495 kb on - strand at 2469.549 kb on + strand, within BWI76_RS11740 at 2469.561 kb on + strand, within BWI76_RS11740 at 2469.569 kb on - strand, within BWI76_RS11740 at 2469.578 kb on - strand at 2469.578 kb on - strand, within BWI76_RS11740 at 2469.578 kb on - strand, within BWI76_RS11740 at 2469.601 kb on - strand, within BWI76_RS11740 at 2469.629 kb on - strand, within BWI76_RS11740 at 2469.629 kb on - strand, within BWI76_RS11740 at 2469.650 kb on + strand, within BWI76_RS11740 at 2469.681 kb on - strand, within BWI76_RS11740 at 2469.781 kb on + strand, within BWI76_RS11740 at 2469.781 kb on + strand, within BWI76_RS11740 at 2469.794 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.808 kb on + strand, within BWI76_RS11740 at 2469.816 kb on - strand, within BWI76_RS11740 at 2469.816 kb on - strand, within BWI76_RS11740 at 2469.816 kb on - strand, within BWI76_RS11740 at 2469.816 kb on - strand, within BWI76_RS11740 at 2469.816 kb on - strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.939 kb on + strand, within BWI76_RS11740 at 2469.941 kb on + strand, within BWI76_RS11740 at 2469.947 kb on - strand, within BWI76_RS11740 at 2469.947 kb on - strand at 2469.950 kb on - strand, within BWI76_RS11740
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 2,466,750 + BWI76_RS11720 0.52 -0.8 2,466,894 - -3.0 2,466,894 - +0.3 2,466,981 - -0.4 2,466,983 - -0.0 2,467,031 - -0.5 2,467,076 + -0.7 2,467,088 + -2.3 2,467,090 + +0.4 2,467,140 + -0.5 2,467,140 + -4.1 2,467,148 - -4.0 2,467,148 - +1.0 2,467,148 - +2.3 2,467,148 - -1.1 2,467,148 - -3.9 2,467,148 - +0.3 2,467,174 - -2.6 2,467,215 + -2.7 2,467,220 + -0.3 2,467,220 + -2.3 2,467,220 + -1.0 2,467,225 + -0.3 2,467,228 - -0.9 2,467,228 - -0.4 2,467,228 - +1.3 2,467,235 + BWI76_RS11725 0.12 +1.3 2,467,236 - BWI76_RS11725 0.12 +0.7 2,467,238 - BWI76_RS11725 0.13 -2.6 2,467,243 - BWI76_RS11725 0.14 +0.8 2,467,243 - BWI76_RS11725 0.14 +0.5 2,467,246 - BWI76_RS11725 0.15 +1.8 2,467,282 + BWI76_RS11725 0.26 -3.0 2,467,298 - BWI76_RS11725 0.31 -2.2 2,467,319 + BWI76_RS11725 0.38 -2.5 2,467,327 - BWI76_RS11725 0.40 +0.7 2,467,390 + BWI76_RS11725 0.60 -1.6 2,467,440 + BWI76_RS11725 0.76 +0.7 2,467,445 + BWI76_RS11725 0.77 -2.2 2,467,448 + BWI76_RS11725 0.78 +0.3 2,467,572 + -1.9 2,467,575 + -4.3 2,467,607 + +0.7 2,467,636 + +0.0 2,467,675 + +2.3 2,467,754 - +0.7 2,467,765 - -2.0 2,467,809 - -1.6 2,467,813 - -3.4 2,467,884 + BWI76_RS11730 0.15 -1.7 2,467,884 + BWI76_RS11730 0.15 +1.6 2,467,900 + BWI76_RS11730 0.16 -1.2 2,467,900 + BWI76_RS11730 0.16 +0.3 2,467,903 - BWI76_RS11730 0.16 -3.4 2,467,910 + BWI76_RS11730 0.16 +1.6 2,467,910 + BWI76_RS11730 0.16 -1.0 2,467,918 + BWI76_RS11730 0.17 -0.5 2,467,926 - BWI76_RS11730 0.18 +1.3 2,467,926 - BWI76_RS11730 0.18 -1.8 2,467,927 - BWI76_RS11730 0.18 -1.0 2,467,933 + BWI76_RS11730 0.18 +0.3 2,467,937 - BWI76_RS11730 0.18 -4.0 2,467,940 + BWI76_RS11730 0.19 -0.1 2,467,940 + BWI76_RS11730 0.19 +0.3 2,467,941 + BWI76_RS11730 0.19 -0.5 2,467,948 - BWI76_RS11730 0.19 -2.0 2,467,949 - BWI76_RS11730 0.19 -0.3 2,467,949 - BWI76_RS11730 0.19 -3.2 2,467,960 + BWI76_RS11730 0.20 -2.7 2,467,960 + BWI76_RS11730 0.20 -2.3 2,467,960 + BWI76_RS11730 0.20 +0.4 2,467,960 + BWI76_RS11730 0.20 -4.0 2,467,960 + BWI76_RS11730 0.20 -1.0 2,467,988 + BWI76_RS11730 0.22 +1.0 2,467,993 + BWI76_RS11730 0.23 +0.9 2,467,993 + BWI76_RS11730 0.23 -2.2 2,468,001 - BWI76_RS11730 0.23 -1.2 2,468,001 - BWI76_RS11730 0.23 -0.0 2,468,001 - BWI76_RS11730 0.23 -1.2 2,468,004 + BWI76_RS11730 0.23 -4.2 2,468,012 + BWI76_RS11730 0.24 -0.8 2,468,012 + BWI76_RS11730 0.24 -2.9 2,468,012 + BWI76_RS11730 0.24 -1.5 2,468,012 + BWI76_RS11730 0.24 +1.9 2,468,025 - BWI76_RS11730 0.25 +0.3 2,468,025 - BWI76_RS11730 0.25 -2.4 2,468,045 - BWI76_RS11730 0.26 +0.0 2,468,045 - BWI76_RS11730 0.26 -0.5 2,468,063 - BWI76_RS11730 0.28 -0.0 2,468,073 - BWI76_RS11730 0.28 +1.2 2,468,080 - BWI76_RS11730 0.29 -1.9 2,468,090 + BWI76_RS11730 0.30 -1.2 2,468,106 + BWI76_RS11730 0.31 -0.7 2,468,152 + BWI76_RS11730 0.34 -2.5 2,468,152 + BWI76_RS11730 0.34 +0.1 2,468,160 - BWI76_RS11730 0.35 -1.0 2,468,160 - BWI76_RS11730 0.35 +1.3 2,468,265 + BWI76_RS11730 0.43 -0.2 2,468,331 - BWI76_RS11730 0.47 +5.7 2,468,366 - BWI76_RS11730 0.50 -0.2 2,468,379 + BWI76_RS11730 0.51 -2.2 2,468,436 - BWI76_RS11730 0.55 -3.6 2,468,462 - BWI76_RS11730 0.57 -4.2 2,468,636 + BWI76_RS11730 0.70 -0.4 2,468,672 + BWI76_RS11730 0.73 -2.8 2,468,755 + BWI76_RS11730 0.79 -1.0 2,468,808 + BWI76_RS11730 0.83 -3.5 2,468,816 - BWI76_RS11730 0.83 +0.6 2,468,890 - BWI76_RS11730 0.89 -2.0 2,468,989 + -0.4 2,469,088 - -1.8 2,469,128 - -0.5 2,469,162 - BWI76_RS11735 0.18 -2.6 2,469,185 - +2.7 2,469,207 - BWI76_RS11735 0.31 -2.1 2,469,370 + BWI76_RS11735 0.78 -1.5 2,469,487 + +0.7 2,469,487 + -4.1 2,469,495 - +0.0 2,469,549 + BWI76_RS11740 0.11 -0.4 2,469,561 + BWI76_RS11740 0.12 +1.3 2,469,569 - BWI76_RS11740 0.13 -3.7 2,469,578 - +0.7 2,469,578 - BWI76_RS11740 0.14 -1.3 2,469,578 - BWI76_RS11740 0.14 +0.7 2,469,601 - BWI76_RS11740 0.17 +0.4 2,469,629 - BWI76_RS11740 0.20 -2.5 2,469,629 - BWI76_RS11740 0.20 -2.5 2,469,650 + BWI76_RS11740 0.23 -1.8 2,469,681 - BWI76_RS11740 0.27 +3.1 2,469,781 + BWI76_RS11740 0.38 -1.5 2,469,781 + BWI76_RS11740 0.38 +0.6 2,469,794 + BWI76_RS11740 0.40 -1.2 2,469,808 + BWI76_RS11740 0.42 -2.0 2,469,808 + BWI76_RS11740 0.42 -0.9 2,469,808 + BWI76_RS11740 0.42 +2.3 2,469,808 + BWI76_RS11740 0.42 -1.4 2,469,808 + BWI76_RS11740 0.42 +0.7 2,469,808 + BWI76_RS11740 0.42 -0.7 2,469,808 + BWI76_RS11740 0.42 +1.3 2,469,808 + BWI76_RS11740 0.42 -1.1 2,469,808 + BWI76_RS11740 0.42 -0.7 2,469,808 + BWI76_RS11740 0.42 +0.3 2,469,816 - BWI76_RS11740 0.43 -0.3 2,469,816 - BWI76_RS11740 0.43 -0.0 2,469,816 - BWI76_RS11740 0.43 +1.6 2,469,816 - BWI76_RS11740 0.43 -0.7 2,469,816 - BWI76_RS11740 0.43 -0.5 2,469,939 + BWI76_RS11740 0.57 -1.4 2,469,939 + BWI76_RS11740 0.57 +1.3 2,469,939 + BWI76_RS11740 0.57 -1.3 2,469,939 + BWI76_RS11740 0.57 -1.4 2,469,939 + BWI76_RS11740 0.57 +1.3 2,469,939 + BWI76_RS11740 0.57 -0.3 2,469,939 + BWI76_RS11740 0.57 +0.7 2,469,939 + BWI76_RS11740 0.57 -0.9 2,469,939 + BWI76_RS11740 0.57 -0.9 2,469,939 + BWI76_RS11740 0.57 -2.6 2,469,939 + BWI76_RS11740 0.57 -3.0 2,469,939 + BWI76_RS11740 0.57 -1.9 2,469,939 + BWI76_RS11740 0.57 -1.0 2,469,939 + BWI76_RS11740 0.57 +1.3 2,469,941 + BWI76_RS11740 0.57 +0.7 2,469,947 - BWI76_RS11740 0.58 +0.9 2,469,947 - +2.3 2,469,950 - BWI76_RS11740 0.59 -2.0
Or see this region's nucleotide sequence