Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS10995

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS10990 and BWI76_RS10995 are separated by 122 nucleotidesBWI76_RS10995 and BWI76_RS11000 are separated by 135 nucleotidesBWI76_RS11000 and BWI76_RS11005 are separated by 65 nucleotides BWI76_RS10990: BWI76_RS10990 - dihydroorotase, at 2,318,330 to 2,319,376 _RS10990 BWI76_RS10995: BWI76_RS10995 - lipoprotein, at 2,319,499 to 2,320,059 _RS10995 BWI76_RS11000: BWI76_RS11000 - glutaredoxin 2, at 2,320,195 to 2,320,842 _RS11000 BWI76_RS11005: BWI76_RS11005 - MFS transporter, at 2,320,908 to 2,322,116 _RS11005 Position (kb) 2319 2320 2321Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2318.567 kb on + strandat 2318.866 kb on - strand, within BWI76_RS10990at 2319.099 kb on - strand, within BWI76_RS10990at 2319.372 kb on + strandat 2319.431 kb on + strandat 2319.761 kb on + strand, within BWI76_RS10995at 2319.769 kb on - strand, within BWI76_RS10995at 2319.838 kb on - strand, within BWI76_RS10995at 2319.947 kb on - strand, within BWI76_RS10995at 2319.989 kb on + strand, within BWI76_RS10995at 2320.007 kb on + strandat 2320.007 kb on - strandat 2320.020 kb on - strandat 2320.176 kb on + strandat 2320.363 kb on - strandat 2320.363 kb on - strand, within BWI76_RS11000at 2320.742 kb on + strand, within BWI76_RS11000at 2320.744 kb on + strand, within BWI76_RS11000at 2320.761 kb on + strand, within BWI76_RS11000at 2320.808 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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2,318,567 + +0.5
2,318,866 - BWI76_RS10990 0.51 +0.3
2,319,099 - BWI76_RS10990 0.73 -0.5
2,319,372 + +0.5
2,319,431 + -0.4
2,319,761 + BWI76_RS10995 0.47 +0.1
2,319,769 - BWI76_RS10995 0.48 +3.4
2,319,838 - BWI76_RS10995 0.60 +1.6
2,319,947 - BWI76_RS10995 0.80 +1.0
2,319,989 + BWI76_RS10995 0.87 +0.2
2,320,007 + +0.4
2,320,007 - -2.3
2,320,020 - -0.9
2,320,176 + -1.5
2,320,363 - -0.1
2,320,363 - BWI76_RS11000 0.26 +0.5
2,320,742 + BWI76_RS11000 0.84 +0.2
2,320,744 + BWI76_RS11000 0.85 +1.0
2,320,761 + BWI76_RS11000 0.87 +0.2
2,320,808 - -0.8

Or see this region's nucleotide sequence