Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05930

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05920 and BWI76_RS05925 are separated by 60 nucleotidesBWI76_RS05925 and BWI76_RS05930 are separated by 25 nucleotidesBWI76_RS05930 and BWI76_RS05935 overlap by 11 nucleotides BWI76_RS05920: BWI76_RS05920 - fimbrillin MatB, at 1,244,167 to 1,244,754 _RS05920 BWI76_RS05925: BWI76_RS05925 - hypothetical protein, at 1,244,815 to 1,245,483 _RS05925 BWI76_RS05930: BWI76_RS05930 - hypothetical protein, at 1,245,509 to 1,248,034 _RS05930 BWI76_RS05935: BWI76_RS05935 - hypothetical protein, at 1,248,024 to 1,249,667 _RS05935 Position (kb) 1245 1246 1247 1248 1249Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 1244.583 kb on + strand, within BWI76_RS05920at 1244.589 kb on + strand, within BWI76_RS05920at 1244.599 kb on - strand, within BWI76_RS05920at 1244.627 kb on + strand, within BWI76_RS05920at 1244.635 kb on - strand, within BWI76_RS05920at 1244.740 kb on + strandat 1244.748 kb on - strandat 1244.798 kb on - strandat 1244.848 kb on - strandat 1245.003 kb on - strand, within BWI76_RS05925at 1245.140 kb on - strand, within BWI76_RS05925at 1245.165 kb on + strand, within BWI76_RS05925at 1245.175 kb on - strand, within BWI76_RS05925at 1245.227 kb on + strand, within BWI76_RS05925at 1245.291 kb on + strand, within BWI76_RS05925at 1245.291 kb on + strand, within BWI76_RS05925at 1245.737 kb on + strandat 1245.737 kb on + strandat 1245.745 kb on - strandat 1245.759 kb on - strandat 1245.876 kb on + strand, within BWI76_RS05930at 1245.915 kb on - strand, within BWI76_RS05930at 1245.968 kb on - strand, within BWI76_RS05930at 1245.994 kb on - strand, within BWI76_RS05930at 1246.029 kb on + strand, within BWI76_RS05930at 1246.036 kb on + strand, within BWI76_RS05930at 1246.153 kb on + strand, within BWI76_RS05930at 1246.154 kb on + strand, within BWI76_RS05930at 1246.155 kb on + strand, within BWI76_RS05930at 1246.163 kb on - strand, within BWI76_RS05930at 1246.177 kb on - strand, within BWI76_RS05930at 1246.263 kb on + strand, within BWI76_RS05930at 1246.408 kb on - strand, within BWI76_RS05930at 1246.418 kb on + strand, within BWI76_RS05930at 1246.831 kb on - strand, within BWI76_RS05930at 1246.997 kb on - strand, within BWI76_RS05930at 1247.016 kb on + strand, within BWI76_RS05930at 1247.047 kb on + strand, within BWI76_RS05930at 1247.055 kb on - strand, within BWI76_RS05930at 1247.227 kb on + strand, within BWI76_RS05930at 1247.365 kb on + strand, within BWI76_RS05930at 1247.373 kb on - strand, within BWI76_RS05930at 1247.382 kb on - strand, within BWI76_RS05930at 1247.424 kb on - strand, within BWI76_RS05930at 1247.441 kb on + strand, within BWI76_RS05930at 1247.558 kb on - strand, within BWI76_RS05930at 1247.565 kb on + strand, within BWI76_RS05930at 1247.797 kb on - strandat 1247.971 kb on + strandat 1248.190 kb on + strand, within BWI76_RS05935at 1248.288 kb on + strand, within BWI76_RS05935at 1248.290 kb on + strand, within BWI76_RS05935at 1248.303 kb on - strand, within BWI76_RS05935at 1248.314 kb on + strand, within BWI76_RS05935at 1248.366 kb on + strand, within BWI76_RS05935at 1248.631 kb on - strand, within BWI76_RS05935at 1248.749 kb on - strand, within BWI76_RS05935at 1248.831 kb on + strand, within BWI76_RS05935at 1248.917 kb on - strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.957 kb on + strand, within BWI76_RS05935at 1248.962 kb on + strand, within BWI76_RS05935at 1248.965 kb on - strand, within BWI76_RS05935

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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1,244,583 + BWI76_RS05920 0.71 -0.5
1,244,589 + BWI76_RS05920 0.72 -3.0
1,244,599 - BWI76_RS05920 0.73 -1.3
1,244,627 + BWI76_RS05920 0.78 +0.2
1,244,635 - BWI76_RS05920 0.80 -0.5
1,244,740 + +1.6
1,244,748 - -0.9
1,244,798 - +1.0
1,244,848 - +0.4
1,245,003 - BWI76_RS05925 0.28 -0.7
1,245,140 - BWI76_RS05925 0.49 -3.8
1,245,165 + BWI76_RS05925 0.52 -0.1
1,245,175 - BWI76_RS05925 0.54 -1.5
1,245,227 + BWI76_RS05925 0.62 -1.9
1,245,291 + BWI76_RS05925 0.71 +0.1
1,245,291 + BWI76_RS05925 0.71 +0.1
1,245,737 + -3.8
1,245,737 + -0.3
1,245,745 - -2.6
1,245,759 - +0.9
1,245,876 + BWI76_RS05930 0.15 -0.7
1,245,915 - BWI76_RS05930 0.16 +0.0
1,245,968 - BWI76_RS05930 0.18 +0.9
1,245,994 - BWI76_RS05930 0.19 -0.0
1,246,029 + BWI76_RS05930 0.21 -0.8
1,246,036 + BWI76_RS05930 0.21 -0.4
1,246,153 + BWI76_RS05930 0.25 +0.7
1,246,154 + BWI76_RS05930 0.26 -2.7
1,246,155 + BWI76_RS05930 0.26 -2.4
1,246,163 - BWI76_RS05930 0.26 -2.2
1,246,177 - BWI76_RS05930 0.26 -1.1
1,246,263 + BWI76_RS05930 0.30 -1.1
1,246,408 - BWI76_RS05930 0.36 -2.2
1,246,418 + BWI76_RS05930 0.36 -0.8
1,246,831 - BWI76_RS05930 0.52 +0.2
1,246,997 - BWI76_RS05930 0.59 -0.5
1,247,016 + BWI76_RS05930 0.60 -2.2
1,247,047 + BWI76_RS05930 0.61 -1.9
1,247,055 - BWI76_RS05930 0.61 -1.3
1,247,227 + BWI76_RS05930 0.68 -1.4
1,247,365 + BWI76_RS05930 0.73 -0.3
1,247,373 - BWI76_RS05930 0.74 -1.1
1,247,382 - BWI76_RS05930 0.74 -0.4
1,247,424 - BWI76_RS05930 0.76 +1.1
1,247,441 + BWI76_RS05930 0.76 -4.6
1,247,558 - BWI76_RS05930 0.81 -0.3
1,247,565 + BWI76_RS05930 0.81 +1.8
1,247,797 - +2.4
1,247,971 + -1.0
1,248,190 + BWI76_RS05935 0.10 +3.4
1,248,288 + BWI76_RS05935 0.16 +0.4
1,248,290 + BWI76_RS05935 0.16 -0.6
1,248,303 - BWI76_RS05935 0.17 +0.6
1,248,314 + BWI76_RS05935 0.18 -2.1
1,248,366 + BWI76_RS05935 0.21 -1.8
1,248,631 - BWI76_RS05935 0.37 -2.5
1,248,749 - BWI76_RS05935 0.44 -0.2
1,248,831 + BWI76_RS05935 0.49 -3.0
1,248,917 - BWI76_RS05935 0.54 -0.6
1,248,957 + BWI76_RS05935 0.57 -2.5
1,248,957 + BWI76_RS05935 0.57 -2.5
1,248,957 + BWI76_RS05935 0.57 -0.9
1,248,962 + BWI76_RS05935 0.57 +0.5
1,248,965 - BWI76_RS05935 0.57 +0.2

Or see this region's nucleotide sequence