Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS05920 and BWI76_RS05925 are separated by 60 nucleotides BWI76_RS05925 and BWI76_RS05930 are separated by 25 nucleotides BWI76_RS05930 and BWI76_RS05935 overlap by 11 nucleotides
BWI76_RS05920: BWI76_RS05920 - fimbrillin MatB, at 1,244,167 to 1,244,754
_RS05920
BWI76_RS05925: BWI76_RS05925 - hypothetical protein, at 1,244,815 to 1,245,483
_RS05925
BWI76_RS05930: BWI76_RS05930 - hypothetical protein, at 1,245,509 to 1,248,034
_RS05930
BWI76_RS05935: BWI76_RS05935 - hypothetical protein, at 1,248,024 to 1,249,667
_RS05935
Position (kb)
1245
1246
1247
1248
1249 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 1244.583 kb on + strand, within BWI76_RS05920 at 1244.589 kb on + strand, within BWI76_RS05920 at 1244.599 kb on - strand, within BWI76_RS05920 at 1244.627 kb on + strand, within BWI76_RS05920 at 1244.635 kb on - strand, within BWI76_RS05920 at 1244.740 kb on + strand at 1244.748 kb on - strand at 1244.798 kb on - strand at 1244.848 kb on - strand at 1245.003 kb on - strand, within BWI76_RS05925 at 1245.140 kb on - strand, within BWI76_RS05925 at 1245.165 kb on + strand, within BWI76_RS05925 at 1245.175 kb on - strand, within BWI76_RS05925 at 1245.227 kb on + strand, within BWI76_RS05925 at 1245.291 kb on + strand, within BWI76_RS05925 at 1245.291 kb on + strand, within BWI76_RS05925 at 1245.737 kb on + strand at 1245.737 kb on + strand at 1245.745 kb on - strand at 1245.759 kb on - strand at 1245.876 kb on + strand, within BWI76_RS05930 at 1245.915 kb on - strand, within BWI76_RS05930 at 1245.968 kb on - strand, within BWI76_RS05930 at 1245.994 kb on - strand, within BWI76_RS05930 at 1246.029 kb on + strand, within BWI76_RS05930 at 1246.036 kb on + strand, within BWI76_RS05930 at 1246.153 kb on + strand, within BWI76_RS05930 at 1246.154 kb on + strand, within BWI76_RS05930 at 1246.155 kb on + strand, within BWI76_RS05930 at 1246.163 kb on - strand, within BWI76_RS05930 at 1246.177 kb on - strand, within BWI76_RS05930 at 1246.263 kb on + strand, within BWI76_RS05930 at 1246.408 kb on - strand, within BWI76_RS05930 at 1246.418 kb on + strand, within BWI76_RS05930 at 1246.831 kb on - strand, within BWI76_RS05930 at 1246.997 kb on - strand, within BWI76_RS05930 at 1247.016 kb on + strand, within BWI76_RS05930 at 1247.047 kb on + strand, within BWI76_RS05930 at 1247.055 kb on - strand, within BWI76_RS05930 at 1247.227 kb on + strand, within BWI76_RS05930 at 1247.365 kb on + strand, within BWI76_RS05930 at 1247.373 kb on - strand, within BWI76_RS05930 at 1247.382 kb on - strand, within BWI76_RS05930 at 1247.424 kb on - strand, within BWI76_RS05930 at 1247.441 kb on + strand, within BWI76_RS05930 at 1247.558 kb on - strand, within BWI76_RS05930 at 1247.565 kb on + strand, within BWI76_RS05930 at 1247.797 kb on - strand at 1247.971 kb on + strand at 1248.190 kb on + strand, within BWI76_RS05935 at 1248.288 kb on + strand, within BWI76_RS05935 at 1248.290 kb on + strand, within BWI76_RS05935 at 1248.303 kb on - strand, within BWI76_RS05935 at 1248.314 kb on + strand, within BWI76_RS05935 at 1248.366 kb on + strand, within BWI76_RS05935 at 1248.631 kb on - strand, within BWI76_RS05935 at 1248.749 kb on - strand, within BWI76_RS05935 at 1248.831 kb on + strand, within BWI76_RS05935 at 1248.917 kb on - strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.957 kb on + strand, within BWI76_RS05935 at 1248.962 kb on + strand, within BWI76_RS05935 at 1248.965 kb on - strand, within BWI76_RS05935
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 1,244,583 + BWI76_RS05920 0.71 -0.5 1,244,589 + BWI76_RS05920 0.72 -3.0 1,244,599 - BWI76_RS05920 0.73 -1.3 1,244,627 + BWI76_RS05920 0.78 +0.2 1,244,635 - BWI76_RS05920 0.80 -0.5 1,244,740 + +1.6 1,244,748 - -0.9 1,244,798 - +1.0 1,244,848 - +0.4 1,245,003 - BWI76_RS05925 0.28 -0.7 1,245,140 - BWI76_RS05925 0.49 -3.8 1,245,165 + BWI76_RS05925 0.52 -0.1 1,245,175 - BWI76_RS05925 0.54 -1.5 1,245,227 + BWI76_RS05925 0.62 -1.9 1,245,291 + BWI76_RS05925 0.71 +0.1 1,245,291 + BWI76_RS05925 0.71 +0.1 1,245,737 + -3.8 1,245,737 + -0.3 1,245,745 - -2.6 1,245,759 - +0.9 1,245,876 + BWI76_RS05930 0.15 -0.7 1,245,915 - BWI76_RS05930 0.16 +0.0 1,245,968 - BWI76_RS05930 0.18 +0.9 1,245,994 - BWI76_RS05930 0.19 -0.0 1,246,029 + BWI76_RS05930 0.21 -0.8 1,246,036 + BWI76_RS05930 0.21 -0.4 1,246,153 + BWI76_RS05930 0.25 +0.7 1,246,154 + BWI76_RS05930 0.26 -2.7 1,246,155 + BWI76_RS05930 0.26 -2.4 1,246,163 - BWI76_RS05930 0.26 -2.2 1,246,177 - BWI76_RS05930 0.26 -1.1 1,246,263 + BWI76_RS05930 0.30 -1.1 1,246,408 - BWI76_RS05930 0.36 -2.2 1,246,418 + BWI76_RS05930 0.36 -0.8 1,246,831 - BWI76_RS05930 0.52 +0.2 1,246,997 - BWI76_RS05930 0.59 -0.5 1,247,016 + BWI76_RS05930 0.60 -2.2 1,247,047 + BWI76_RS05930 0.61 -1.9 1,247,055 - BWI76_RS05930 0.61 -1.3 1,247,227 + BWI76_RS05930 0.68 -1.4 1,247,365 + BWI76_RS05930 0.73 -0.3 1,247,373 - BWI76_RS05930 0.74 -1.1 1,247,382 - BWI76_RS05930 0.74 -0.4 1,247,424 - BWI76_RS05930 0.76 +1.1 1,247,441 + BWI76_RS05930 0.76 -4.6 1,247,558 - BWI76_RS05930 0.81 -0.3 1,247,565 + BWI76_RS05930 0.81 +1.8 1,247,797 - +2.4 1,247,971 + -1.0 1,248,190 + BWI76_RS05935 0.10 +3.4 1,248,288 + BWI76_RS05935 0.16 +0.4 1,248,290 + BWI76_RS05935 0.16 -0.6 1,248,303 - BWI76_RS05935 0.17 +0.6 1,248,314 + BWI76_RS05935 0.18 -2.1 1,248,366 + BWI76_RS05935 0.21 -1.8 1,248,631 - BWI76_RS05935 0.37 -2.5 1,248,749 - BWI76_RS05935 0.44 -0.2 1,248,831 + BWI76_RS05935 0.49 -3.0 1,248,917 - BWI76_RS05935 0.54 -0.6 1,248,957 + BWI76_RS05935 0.57 -2.5 1,248,957 + BWI76_RS05935 0.57 -2.5 1,248,957 + BWI76_RS05935 0.57 -0.9 1,248,962 + BWI76_RS05935 0.57 +0.5 1,248,965 - BWI76_RS05935 0.57 +0.2
Or see this region's nucleotide sequence