Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05750

Experiment: K. M5a1 KLEB26 MOI 0.1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBWI76_RS05745 and BWI76_RS05750 are separated by 72 nucleotidesBWI76_RS05750 and BWI76_RS05755 are separated by 270 nucleotides BWI76_RS05745: BWI76_RS05745 - hypothetical protein, at 1,208,042 to 1,209,280 _RS05745 BWI76_RS05750: BWI76_RS05750 - thiamine biosynthesis protein ThiJ, at 1,209,353 to 1,210,048 _RS05750 BWI76_RS05755: BWI76_RS05755 - beta-ketoacyl-[acyl-carrier-protein] synthase II, at 1,210,319 to 1,211,590 _RS05755 Position (kb) 1209 1210 1211Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1209.263 kb on + strandat 1209.461 kb on + strand, within BWI76_RS05750at 1209.473 kb on + strand, within BWI76_RS05750at 1209.473 kb on + strand, within BWI76_RS05750at 1209.481 kb on - strand, within BWI76_RS05750at 1209.481 kb on - strand, within BWI76_RS05750at 1209.481 kb on - strand, within BWI76_RS05750at 1209.610 kb on + strand, within BWI76_RS05750at 1209.616 kb on - strand, within BWI76_RS05750at 1209.639 kb on + strand, within BWI76_RS05750at 1209.703 kb on + strand, within BWI76_RS05750at 1209.736 kb on + strand, within BWI76_RS05750at 1209.817 kb on + strand, within BWI76_RS05750at 1209.820 kb on - strand, within BWI76_RS05750at 1209.825 kb on - strand, within BWI76_RS05750at 1209.870 kb on - strand, within BWI76_RS05750at 1209.921 kb on - strand, within BWI76_RS05750at 1209.967 kb on - strand, within BWI76_RS05750at 1209.994 kb on + strandat 1209.994 kb on + strandat 1210.012 kb on + strandat 1210.012 kb on + strandat 1210.012 kb on + strandat 1210.020 kb on - strandat 1210.105 kb on + strandat 1210.107 kb on + strandat 1210.113 kb on - strandat 1210.116 kb on + strandat 1210.131 kb on + strandat 1210.139 kb on - strandat 1210.175 kb on - strandat 1210.280 kb on - strandat 1210.421 kb on + strandat 1210.428 kb on - strandat 1210.507 kb on - strand, within BWI76_RS05755at 1210.655 kb on - strand, within BWI76_RS05755at 1211.043 kb on + strand, within BWI76_RS05755

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Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
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1,209,263 + -0.8
1,209,461 + BWI76_RS05750 0.16 +1.0
1,209,473 + BWI76_RS05750 0.17 +0.3
1,209,473 + BWI76_RS05750 0.17 -1.2
1,209,481 - BWI76_RS05750 0.18 +1.1
1,209,481 - BWI76_RS05750 0.18 -0.1
1,209,481 - BWI76_RS05750 0.18 -2.3
1,209,610 + BWI76_RS05750 0.37 -4.1
1,209,616 - BWI76_RS05750 0.38 -0.3
1,209,639 + BWI76_RS05750 0.41 +0.8
1,209,703 + BWI76_RS05750 0.50 -0.4
1,209,736 + BWI76_RS05750 0.55 +0.2
1,209,817 + BWI76_RS05750 0.67 -1.1
1,209,820 - BWI76_RS05750 0.67 -1.5
1,209,825 - BWI76_RS05750 0.68 +0.4
1,209,870 - BWI76_RS05750 0.74 -1.4
1,209,921 - BWI76_RS05750 0.82 +0.2
1,209,967 - BWI76_RS05750 0.88 +1.5
1,209,994 + -4.7
1,209,994 + -2.9
1,210,012 + -0.7
1,210,012 + -0.5
1,210,012 + -2.5
1,210,020 - -2.8
1,210,105 + +1.9
1,210,107 + +0.1
1,210,113 - -0.7
1,210,116 + -0.6
1,210,131 + +0.2
1,210,139 - -0.6
1,210,175 - -2.0
1,210,280 - -3.1
1,210,421 + +1.6
1,210,428 - -0.9
1,210,507 - BWI76_RS05755 0.15 -0.2
1,210,655 - BWI76_RS05755 0.26 -0.1
1,211,043 + BWI76_RS05755 0.57 +0.3

Or see this region's nucleotide sequence