Strain Fitness in Klebsiella michiganensis M5al around BWI76_RS05475

Experiment: K. M5a1 KLEB26 MOI 0.1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntBWI76_RS05470 and BWI76_RS05475 are separated by 238 nucleotidesBWI76_RS05475 and BWI76_RS05480 are separated by 43 nucleotidesBWI76_RS05480 and BWI76_RS05485 overlap by 30 nucleotides BWI76_RS05470: BWI76_RS05470 - acyl-CoA dehydrogenase, at 1,146,634 to 1,149,078 _RS05470 BWI76_RS05475: BWI76_RS05475 - phosphoheptose isomerase, at 1,149,317 to 1,149,898 _RS05475 BWI76_RS05480: BWI76_RS05480 - class II glutamine amidotransferase, at 1,149,942 to 1,150,709 _RS05480 BWI76_RS05485: BWI76_RS05485 - transpeptidase, at 1,150,680 to 1,151,420 _RS05485 Position (kb) 1149 1150Strain fitness (log2 ratio) -2 -1 0 1at 1148.429 kb on + strand, within BWI76_RS05470at 1148.462 kb on - strand, within BWI76_RS05470at 1148.462 kb on - strand, within BWI76_RS05470at 1148.522 kb on + strand, within BWI76_RS05470at 1148.528 kb on - strand, within BWI76_RS05470at 1148.530 kb on - strand, within BWI76_RS05470at 1148.565 kb on - strand, within BWI76_RS05470at 1148.598 kb on + strand, within BWI76_RS05470at 1148.606 kb on - strand, within BWI76_RS05470at 1149.270 kb on + strandat 1150.067 kb on + strand, within BWI76_RS05480at 1150.068 kb on + strand, within BWI76_RS05480at 1150.076 kb on - strand, within BWI76_RS05480at 1150.252 kb on - strand, within BWI76_RS05480at 1150.474 kb on - strand, within BWI76_RS05480

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1
remove
1,148,429 + BWI76_RS05470 0.73 -1.8
1,148,462 - BWI76_RS05470 0.75 -0.4
1,148,462 - BWI76_RS05470 0.75 -0.1
1,148,522 + BWI76_RS05470 0.77 -0.1
1,148,528 - BWI76_RS05470 0.77 -1.0
1,148,530 - BWI76_RS05470 0.78 +1.3
1,148,565 - BWI76_RS05470 0.79 +0.9
1,148,598 + BWI76_RS05470 0.80 +0.9
1,148,606 - BWI76_RS05470 0.81 +0.4
1,149,270 + +0.9
1,150,067 + BWI76_RS05480 0.16 +0.3
1,150,068 + BWI76_RS05480 0.16 +0.7
1,150,076 - BWI76_RS05480 0.17 -0.7
1,150,252 - BWI76_RS05480 0.40 -0.1
1,150,474 - BWI76_RS05480 0.69 +1.2

Or see this region's nucleotide sequence