Experiment: K. M5a1 KLEB26 MOI 0.1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BWI76_RS03950 and BWI76_RS03955 are separated by 99 nucleotides BWI76_RS03955 and BWI76_RS03960 are separated by 14 nucleotides BWI76_RS03960 and BWI76_RS03965 are separated by 16 nucleotides
BWI76_RS03950: BWI76_RS03950 - sigma-54 interacting domain-containing protein, at 816,725 to 819,490
_RS03950
BWI76_RS03955: BWI76_RS03955 - PTS system fructose subfamily transporter subunit IIA, at 819,590 to 820,012
_RS03955
BWI76_RS03960: BWI76_RS03960 - PTS system sorbose subfamily IIB component, at 820,027 to 820,497
_RS03960
BWI76_RS03965: BWI76_RS03965 - PTS sugar transporter, at 820,514 to 821,293
_RS03965
Position (kb) 819
820
821 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 818.690 kb on - strand, within BWI76_RS03950 at 818.695 kb on - strand, within BWI76_RS03950 at 818.726 kb on - strand, within BWI76_RS03950 at 818.766 kb on - strand, within BWI76_RS03950 at 818.803 kb on - strand at 819.088 kb on - strand, within BWI76_RS03950 at 819.090 kb on + strand, within BWI76_RS03950 at 819.090 kb on + strand, within BWI76_RS03950 at 819.098 kb on - strand, within BWI76_RS03950 at 819.098 kb on - strand, within BWI76_RS03950 at 819.272 kb on + strand at 819.275 kb on + strand at 819.285 kb on + strand at 819.374 kb on + strand at 819.425 kb on - strand at 819.513 kb on + strand at 819.526 kb on - strand at 819.638 kb on + strand, within BWI76_RS03955 at 819.638 kb on + strand, within BWI76_RS03955 at 819.638 kb on + strand, within BWI76_RS03955 at 819.640 kb on + strand, within BWI76_RS03955 at 819.640 kb on + strand, within BWI76_RS03955 at 819.645 kb on + strand, within BWI76_RS03955 at 819.646 kb on - strand, within BWI76_RS03955 at 819.646 kb on - strand, within BWI76_RS03955 at 819.646 kb on - strand, within BWI76_RS03955 at 819.646 kb on - strand, within BWI76_RS03955 at 819.648 kb on + strand, within BWI76_RS03955 at 819.648 kb on + strand, within BWI76_RS03955 at 819.648 kb on - strand, within BWI76_RS03955 at 819.648 kb on - strand, within BWI76_RS03955 at 819.648 kb on - strand, within BWI76_RS03955 at 819.648 kb on - strand, within BWI76_RS03955 at 819.648 kb on - strand, within BWI76_RS03955 at 819.653 kb on - strand, within BWI76_RS03955 at 819.673 kb on + strand, within BWI76_RS03955 at 819.681 kb on + strand, within BWI76_RS03955 at 819.681 kb on + strand, within BWI76_RS03955 at 819.689 kb on + strand, within BWI76_RS03955 at 819.689 kb on - strand, within BWI76_RS03955 at 819.689 kb on - strand, within BWI76_RS03955 at 819.689 kb on - strand, within BWI76_RS03955 at 819.689 kb on - strand, within BWI76_RS03955 at 819.699 kb on + strand, within BWI76_RS03955 at 819.699 kb on + strand, within BWI76_RS03955 at 819.702 kb on + strand, within BWI76_RS03955 at 819.707 kb on - strand, within BWI76_RS03955 at 819.710 kb on - strand, within BWI76_RS03955 at 819.711 kb on + strand, within BWI76_RS03955 at 819.715 kb on - strand, within BWI76_RS03955 at 819.719 kb on - strand, within BWI76_RS03955 at 819.730 kb on + strand, within BWI76_RS03955 at 819.730 kb on + strand, within BWI76_RS03955 at 819.730 kb on + strand, within BWI76_RS03955 at 819.730 kb on + strand, within BWI76_RS03955 at 819.730 kb on + strand, within BWI76_RS03955 at 819.738 kb on - strand, within BWI76_RS03955 at 819.738 kb on - strand, within BWI76_RS03955 at 819.738 kb on - strand, within BWI76_RS03955 at 819.740 kb on - strand, within BWI76_RS03955 at 819.742 kb on + strand, within BWI76_RS03955 at 819.750 kb on - strand, within BWI76_RS03955 at 819.770 kb on - strand, within BWI76_RS03955 at 819.776 kb on - strand, within BWI76_RS03955 at 819.780 kb on - strand, within BWI76_RS03955 at 819.816 kb on - strand, within BWI76_RS03955 at 819.823 kb on + strand, within BWI76_RS03955 at 819.858 kb on + strand, within BWI76_RS03955 at 819.858 kb on + strand, within BWI76_RS03955 at 819.865 kb on - strand, within BWI76_RS03955 at 819.865 kb on - strand, within BWI76_RS03955 at 819.866 kb on - strand, within BWI76_RS03955 at 819.899 kb on + strand, within BWI76_RS03955 at 819.907 kb on - strand, within BWI76_RS03955 at 819.907 kb on - strand, within BWI76_RS03955 at 819.910 kb on - strand, within BWI76_RS03955 at 819.910 kb on - strand, within BWI76_RS03955 at 819.942 kb on + strand, within BWI76_RS03955 at 819.947 kb on + strand, within BWI76_RS03955 at 819.954 kb on + strand, within BWI76_RS03955 at 819.956 kb on + strand, within BWI76_RS03955 at 819.969 kb on - strand, within BWI76_RS03955 at 819.969 kb on - strand, within BWI76_RS03955 at 819.983 kb on + strand at 820.006 kb on - strand at 820.014 kb on - strand at 820.030 kb on - strand at 820.038 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.060 kb on + strand at 820.068 kb on - strand at 820.075 kb on + strand, within BWI76_RS03960 at 820.083 kb on - strand, within BWI76_RS03960 at 820.125 kb on + strand at 820.149 kb on + strand, within BWI76_RS03960 at 820.184 kb on + strand, within BWI76_RS03960 at 820.184 kb on + strand, within BWI76_RS03960 at 820.184 kb on + strand, within BWI76_RS03960 at 820.184 kb on + strand, within BWI76_RS03960 at 820.184 kb on + strand, within BWI76_RS03960 at 820.192 kb on - strand, within BWI76_RS03960 at 820.192 kb on - strand, within BWI76_RS03960 at 820.217 kb on + strand, within BWI76_RS03960 at 820.217 kb on + strand, within BWI76_RS03960 at 820.225 kb on - strand, within BWI76_RS03960 at 820.267 kb on + strand, within BWI76_RS03960 at 820.278 kb on + strand, within BWI76_RS03960 at 820.286 kb on - strand, within BWI76_RS03960 at 820.287 kb on + strand, within BWI76_RS03960 at 820.287 kb on + strand, within BWI76_RS03960 at 820.300 kb on - strand, within BWI76_RS03960 at 820.302 kb on - strand, within BWI76_RS03960 at 820.325 kb on + strand, within BWI76_RS03960 at 820.325 kb on + strand, within BWI76_RS03960 at 820.333 kb on - strand, within BWI76_RS03960 at 820.333 kb on - strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.341 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.346 kb on + strand, within BWI76_RS03960 at 820.347 kb on + strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.349 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.354 kb on - strand, within BWI76_RS03960 at 820.356 kb on - strand, within BWI76_RS03960 at 820.408 kb on - strand, within BWI76_RS03960 at 820.411 kb on + strand at 820.418 kb on - strand, within BWI76_RS03960 at 820.422 kb on + strand, within BWI76_RS03960 at 820.430 kb on - strand, within BWI76_RS03960 at 820.432 kb on + strand, within BWI76_RS03960 at 820.433 kb on + strand, within BWI76_RS03960 at 820.439 kb on + strand, within BWI76_RS03960 at 820.440 kb on - strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on + strand, within BWI76_RS03960 at 820.441 kb on - strand, within BWI76_RS03960 at 820.447 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.449 kb on - strand, within BWI76_RS03960 at 820.456 kb on + strand at 820.463 kb on - strand at 820.476 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.510 kb on + strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.518 kb on - strand at 820.526 kb on + strand at 820.534 kb on - strand at 820.544 kb on - strand at 820.544 kb on - strand at 820.620 kb on + strand, within BWI76_RS03965 at 820.625 kb on + strand, within BWI76_RS03965 at 820.628 kb on - strand, within BWI76_RS03965 at 820.721 kb on - strand, within BWI76_RS03965 at 820.809 kb on - strand, within BWI76_RS03965 at 820.843 kb on + strand, within BWI76_RS03965 at 820.882 kb on - strand, within BWI76_RS03965 at 820.892 kb on - strand, within BWI76_RS03965 at 820.965 kb on - strand, within BWI76_RS03965
Per-strain Table
Position Strand Gene LocusTag Fraction K. M5a1 KLEB26 MOI 0.1 remove 818,690 - BWI76_RS03950 0.71 -0.3 818,695 - BWI76_RS03950 0.71 -0.4 818,726 - BWI76_RS03950 0.72 -0.5 818,766 - BWI76_RS03950 0.74 +1.3 818,803 - -1.1 819,088 - BWI76_RS03950 0.85 +0.8 819,090 + BWI76_RS03950 0.86 +0.4 819,090 + BWI76_RS03950 0.86 +0.3 819,098 - BWI76_RS03950 0.86 -1.9 819,098 - BWI76_RS03950 0.86 +0.1 819,272 + -3.1 819,275 + -1.1 819,285 + -1.0 819,374 + +1.4 819,425 - -2.1 819,513 + -0.4 819,526 - +0.2 819,638 + BWI76_RS03955 0.11 -2.8 819,638 + BWI76_RS03955 0.11 -0.4 819,638 + BWI76_RS03955 0.11 -0.4 819,640 + BWI76_RS03955 0.12 -1.4 819,640 + BWI76_RS03955 0.12 -1.5 819,645 + BWI76_RS03955 0.13 -1.5 819,646 - BWI76_RS03955 0.13 -4.0 819,646 - BWI76_RS03955 0.13 -2.1 819,646 - BWI76_RS03955 0.13 +0.4 819,646 - BWI76_RS03955 0.13 -1.2 819,648 + BWI76_RS03955 0.14 -0.0 819,648 + BWI76_RS03955 0.14 -1.4 819,648 - BWI76_RS03955 0.14 -0.4 819,648 - BWI76_RS03955 0.14 +1.7 819,648 - BWI76_RS03955 0.14 +0.2 819,648 - BWI76_RS03955 0.14 -0.3 819,648 - BWI76_RS03955 0.14 -0.6 819,653 - BWI76_RS03955 0.15 -2.8 819,673 + BWI76_RS03955 0.20 -2.4 819,681 + BWI76_RS03955 0.22 -0.2 819,681 + BWI76_RS03955 0.22 -1.3 819,689 + BWI76_RS03955 0.23 -0.3 819,689 - BWI76_RS03955 0.23 +0.1 819,689 - BWI76_RS03955 0.23 -1.6 819,689 - BWI76_RS03955 0.23 +0.9 819,689 - BWI76_RS03955 0.23 +0.5 819,699 + BWI76_RS03955 0.26 -0.7 819,699 + BWI76_RS03955 0.26 +1.5 819,702 + BWI76_RS03955 0.26 +0.6 819,707 - BWI76_RS03955 0.28 -1.3 819,710 - BWI76_RS03955 0.28 -2.3 819,711 + BWI76_RS03955 0.29 -0.2 819,715 - BWI76_RS03955 0.30 -2.5 819,719 - BWI76_RS03955 0.30 -0.8 819,730 + BWI76_RS03955 0.33 -0.8 819,730 + BWI76_RS03955 0.33 -2.8 819,730 + BWI76_RS03955 0.33 -1.6 819,730 + BWI76_RS03955 0.33 -3.7 819,730 + BWI76_RS03955 0.33 +0.8 819,738 - BWI76_RS03955 0.35 -2.7 819,738 - BWI76_RS03955 0.35 +2.0 819,738 - BWI76_RS03955 0.35 +0.6 819,740 - BWI76_RS03955 0.35 -2.0 819,742 + BWI76_RS03955 0.36 -3.2 819,750 - BWI76_RS03955 0.38 +0.3 819,770 - BWI76_RS03955 0.43 +1.1 819,776 - BWI76_RS03955 0.44 -0.9 819,780 - BWI76_RS03955 0.45 -3.0 819,816 - BWI76_RS03955 0.53 -4.6 819,823 + BWI76_RS03955 0.55 -2.1 819,858 + BWI76_RS03955 0.63 -0.3 819,858 + BWI76_RS03955 0.63 +1.9 819,865 - BWI76_RS03955 0.65 -0.2 819,865 - BWI76_RS03955 0.65 -3.3 819,866 - BWI76_RS03955 0.65 -0.3 819,899 + BWI76_RS03955 0.73 -0.4 819,907 - BWI76_RS03955 0.75 +0.2 819,907 - BWI76_RS03955 0.75 -0.6 819,910 - BWI76_RS03955 0.76 +0.3 819,910 - BWI76_RS03955 0.76 +0.6 819,942 + BWI76_RS03955 0.83 -0.4 819,947 + BWI76_RS03955 0.84 +0.7 819,954 + BWI76_RS03955 0.86 -0.2 819,956 + BWI76_RS03955 0.87 -0.5 819,969 - BWI76_RS03955 0.90 -0.8 819,969 - BWI76_RS03955 0.90 -1.1 819,983 + -1.0 820,006 - -0.6 820,014 - -2.8 820,030 - -0.2 820,038 + -1.9 820,060 + -0.9 820,060 + -0.7 820,060 + -0.3 820,060 + -0.0 820,060 + -1.8 820,060 + -1.7 820,060 + -3.5 820,060 + -1.9 820,068 - -4.8 820,075 + BWI76_RS03960 0.10 -0.0 820,083 - BWI76_RS03960 0.12 -1.6 820,125 + +0.4 820,149 + BWI76_RS03960 0.26 +0.8 820,184 + BWI76_RS03960 0.33 +1.0 820,184 + BWI76_RS03960 0.33 -2.4 820,184 + BWI76_RS03960 0.33 +1.2 820,184 + BWI76_RS03960 0.33 +0.8 820,184 + BWI76_RS03960 0.33 +0.7 820,192 - BWI76_RS03960 0.35 -0.4 820,192 - BWI76_RS03960 0.35 -0.6 820,217 + BWI76_RS03960 0.40 +0.4 820,217 + BWI76_RS03960 0.40 +0.2 820,225 - BWI76_RS03960 0.42 +0.6 820,267 + BWI76_RS03960 0.51 -1.1 820,278 + BWI76_RS03960 0.53 +2.0 820,286 - BWI76_RS03960 0.55 -1.5 820,287 + BWI76_RS03960 0.55 -2.0 820,287 + BWI76_RS03960 0.55 +0.5 820,300 - BWI76_RS03960 0.58 +0.7 820,302 - BWI76_RS03960 0.58 -1.1 820,325 + BWI76_RS03960 0.63 -0.4 820,325 + BWI76_RS03960 0.63 -0.8 820,333 - BWI76_RS03960 0.65 -0.4 820,333 - BWI76_RS03960 0.65 -0.1 820,341 + BWI76_RS03960 0.67 -1.9 820,341 + BWI76_RS03960 0.67 -3.7 820,341 + BWI76_RS03960 0.67 -0.4 820,341 + BWI76_RS03960 0.67 +1.5 820,341 + BWI76_RS03960 0.67 +0.4 820,341 + BWI76_RS03960 0.67 -3.2 820,346 + BWI76_RS03960 0.68 +0.7 820,346 + BWI76_RS03960 0.68 -0.8 820,346 + BWI76_RS03960 0.68 -0.3 820,346 + BWI76_RS03960 0.68 -0.7 820,346 + BWI76_RS03960 0.68 -3.0 820,346 + BWI76_RS03960 0.68 -0.2 820,346 + BWI76_RS03960 0.68 -2.2 820,346 + BWI76_RS03960 0.68 -2.7 820,346 + BWI76_RS03960 0.68 +1.3 820,346 + BWI76_RS03960 0.68 +0.3 820,346 + BWI76_RS03960 0.68 -0.4 820,347 + BWI76_RS03960 0.68 +1.0 820,349 - BWI76_RS03960 0.68 +0.6 820,349 - BWI76_RS03960 0.68 +0.9 820,349 - BWI76_RS03960 0.68 -0.5 820,349 - BWI76_RS03960 0.68 -0.2 820,349 - BWI76_RS03960 0.68 -1.7 820,349 - BWI76_RS03960 0.68 -1.2 820,354 - BWI76_RS03960 0.69 -1.7 820,354 - BWI76_RS03960 0.69 -3.1 820,354 - BWI76_RS03960 0.69 -0.8 820,354 - BWI76_RS03960 0.69 -2.1 820,354 - BWI76_RS03960 0.69 +0.4 820,354 - BWI76_RS03960 0.69 -0.6 820,356 - BWI76_RS03960 0.70 -3.4 820,408 - BWI76_RS03960 0.81 -0.3 820,411 + +0.8 820,418 - BWI76_RS03960 0.83 -1.2 820,422 + BWI76_RS03960 0.84 -0.5 820,430 - BWI76_RS03960 0.86 +0.9 820,432 + BWI76_RS03960 0.86 -0.6 820,433 + BWI76_RS03960 0.86 +0.9 820,439 + BWI76_RS03960 0.87 -4.3 820,440 - BWI76_RS03960 0.88 -2.4 820,441 + BWI76_RS03960 0.88 -3.3 820,441 + BWI76_RS03960 0.88 -1.2 820,441 + BWI76_RS03960 0.88 +0.1 820,441 - BWI76_RS03960 0.88 +1.5 820,447 - BWI76_RS03960 0.89 +1.7 820,449 - BWI76_RS03960 0.90 +1.4 820,449 - BWI76_RS03960 0.90 -1.1 820,449 - BWI76_RS03960 0.90 +1.1 820,449 - BWI76_RS03960 0.90 +0.3 820,449 - BWI76_RS03960 0.90 +1.7 820,449 - BWI76_RS03960 0.90 +0.5 820,456 + +0.3 820,463 - +0.3 820,476 + -0.1 820,510 + +0.4 820,510 + -1.8 820,510 + -1.5 820,510 + -1.2 820,518 - -1.2 820,518 - -3.3 820,518 - -0.3 820,518 - -0.6 820,518 - +1.8 820,518 - +1.6 820,518 - -1.9 820,518 - -1.4 820,518 - +1.4 820,526 + -3.9 820,534 - -1.9 820,544 - +0.5 820,544 - +0.7 820,620 + BWI76_RS03965 0.14 -0.0 820,625 + BWI76_RS03965 0.14 +0.4 820,628 - BWI76_RS03965 0.15 -3.3 820,721 - BWI76_RS03965 0.27 +1.2 820,809 - BWI76_RS03965 0.38 +0.4 820,843 + BWI76_RS03965 0.42 -1.0 820,882 - BWI76_RS03965 0.47 -1.3 820,892 - BWI76_RS03965 0.48 +0.3 820,965 - BWI76_RS03965 0.58 -3.3
Or see this region's nucleotide sequence