Strain Fitness in Bacteroides thetaiotaomicron VPI-5482 around BT4060

Experiment: cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBT4059 and BT4060 are separated by 82 nucleotidesBT4060 and BT4061 are separated by 87 nucleotidesBT4061 and BT4062 are separated by 95 nucleotides BT4059: BT4059 - NADH dehydrogenase I, chain M (NCBI ptt file), at 5,292,473 to 5,293,957 BT4059 BT4060: BT4060 - NADH dehydrogenase I, chain L (NCBI ptt file), at 5,294,040 to 5,295,971 BT4060 BT4061: BT4061 - NADH dehydrogenase I, chain K (NCBI ptt file), at 5,296,059 to 5,296,367 BT4061 BT4062: BT4062 - NADH dehydrogenase I, chain J (NCBI ptt file), at 5,296,463 to 5,296,975 BT4062 Position (kb) 5294 5295 5296Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5293.124 kb on + strand, within BT4059at 5293.161 kb on + strand, within BT4059at 5293.162 kb on - strand, within BT4059at 5293.162 kb on - strand, within BT4059at 5293.205 kb on + strand, within BT4059at 5293.226 kb on + strand, within BT4059at 5293.348 kb on + strand, within BT4059at 5293.387 kb on + strand, within BT4059at 5293.454 kb on - strand, within BT4059at 5293.483 kb on + strand, within BT4059at 5293.483 kb on + strand, within BT4059at 5293.515 kb on + strand, within BT4059at 5293.516 kb on - strand, within BT4059at 5293.539 kb on + strand, within BT4059at 5293.540 kb on - strand, within BT4059at 5293.573 kb on + strand, within BT4059at 5293.594 kb on + strand, within BT4059at 5293.660 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.670 kb on + strand, within BT4059at 5293.688 kb on + strand, within BT4059at 5293.688 kb on + strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.750 kb on - strand, within BT4059at 5293.812 kb on + strandat 5293.826 kb on + strandat 5294.021 kb on - strandat 5294.034 kb on + strandat 5294.042 kb on - strandat 5294.089 kb on + strandat 5294.089 kb on + strandat 5294.089 kb on + strandat 5294.127 kb on + strandat 5294.184 kb on + strandat 5294.256 kb on + strand, within BT4060at 5294.256 kb on + strand, within BT4060at 5294.258 kb on + strand, within BT4060at 5294.258 kb on + strand, within BT4060at 5294.259 kb on - strand, within BT4060at 5294.267 kb on + strand, within BT4060at 5294.281 kb on + strand, within BT4060at 5294.348 kb on + strand, within BT4060at 5294.350 kb on + strand, within BT4060at 5294.379 kb on - strand, within BT4060at 5294.582 kb on + strand, within BT4060at 5294.583 kb on - strand, within BT4060at 5294.654 kb on - strand, within BT4060at 5294.705 kb on + strand, within BT4060at 5294.705 kb on + strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.706 kb on - strand, within BT4060at 5294.810 kb on + strand, within BT4060at 5294.810 kb on + strand, within BT4060at 5294.819 kb on - strand, within BT4060at 5294.819 kb on - strand, within BT4060at 5294.827 kb on - strand, within BT4060at 5294.895 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060at 5294.942 kb on + strand, within BT4060at 5294.973 kb on - strand, within BT4060at 5294.973 kb on - strand, within BT4060at 5295.003 kb on - strand, within BT4060at 5295.100 kb on - strand, within BT4060at 5295.113 kb on + strand, within BT4060at 5295.114 kb on - strand, within BT4060at 5295.117 kb on + strand, within BT4060at 5295.118 kb on - strand, within BT4060at 5295.118 kb on - strand, within BT4060at 5295.183 kb on + strand, within BT4060at 5295.191 kb on + strand, within BT4060at 5295.222 kb on - strand, within BT4060at 5295.222 kb on - strand, within BT4060at 5295.251 kb on + strand, within BT4060at 5295.379 kb on + strand, within BT4060at 5295.388 kb on + strand, within BT4060at 5295.414 kb on + strand, within BT4060at 5295.414 kb on + strand, within BT4060at 5295.478 kb on + strand, within BT4060at 5295.481 kb on + strand, within BT4060at 5295.532 kb on + strand, within BT4060at 5295.601 kb on + strand, within BT4060at 5295.604 kb on + strand, within BT4060at 5295.647 kb on - strand, within BT4060at 5295.647 kb on - strand, within BT4060at 5295.650 kb on + strand, within BT4060at 5295.651 kb on - strand, within BT4060at 5295.765 kb on - strand, within BT4060at 5295.767 kb on - strand, within BT4060at 5295.771 kb on + strand, within BT4060at 5295.772 kb on - strand, within BT4060at 5295.835 kb on + strandat 5295.835 kb on + strandat 5295.836 kb on - strandat 5295.849 kb on + strandat 5295.849 kb on + strandat 5295.850 kb on - strandat 5295.869 kb on + strandat 5295.972 kb on - strandat 5295.987 kb on + strandat 5295.987 kb on + strandat 5295.996 kb on + strandat 5296.012 kb on + strandat 5296.137 kb on + strand, within BT4061at 5296.137 kb on + strand, within BT4061at 5296.137 kb on + strand, within BT4061at 5296.137 kb on + strand, within BT4061at 5296.257 kb on + strand, within BT4061at 5296.401 kb on + strandat 5296.442 kb on + strandat 5296.442 kb on + strandat 5296.449 kb on + strandat 5296.452 kb on + strandat 5296.540 kb on + strand, within BT4062at 5296.542 kb on + strand, within BT4062at 5296.548 kb on + strand, within BT4062at 5296.548 kb on + strand, within BT4062at 5296.592 kb on + strand, within BT4062at 5296.757 kb on + strand, within BT4062at 5296.761 kb on + strand, within BT4062at 5296.761 kb on + strand, within BT4062at 5296.774 kb on + strand, within BT4062at 5296.869 kb on + strand, within BT4062at 5296.928 kb on - strandat 5296.949 kb on + strandat 5296.949 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction cage1; mouse2; day5; diet=StandardDiet; sample=FecalPellet; coculture=Bbreve_UCC2003
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5,293,124 + BT4059 0.44 -0.4
5,293,161 + BT4059 0.46 -1.2
5,293,162 - BT4059 0.46 +0.6
5,293,162 - BT4059 0.46 +0.1
5,293,205 + BT4059 0.49 -0.0
5,293,226 + BT4059 0.51 -0.8
5,293,348 + BT4059 0.59 -0.8
5,293,387 + BT4059 0.62 +1.0
5,293,454 - BT4059 0.66 -0.9
5,293,483 + BT4059 0.68 -0.2
5,293,483 + BT4059 0.68 -0.9
5,293,515 + BT4059 0.70 -0.4
5,293,516 - BT4059 0.70 +0.2
5,293,539 + BT4059 0.72 +0.5
5,293,540 - BT4059 0.72 +0.5
5,293,573 + BT4059 0.74 -1.0
5,293,594 + BT4059 0.75 +0.4
5,293,660 + BT4059 0.80 +2.1
5,293,670 + BT4059 0.81 +0.6
5,293,670 + BT4059 0.81 +0.1
5,293,670 + BT4059 0.81 -0.5
5,293,670 + BT4059 0.81 +0.6
5,293,688 + BT4059 0.82 -1.0
5,293,688 + BT4059 0.82 +0.3
5,293,750 - BT4059 0.86 -0.4
5,293,750 - BT4059 0.86 -0.9
5,293,750 - BT4059 0.86 +0.6
5,293,812 + -0.6
5,293,826 + -2.3
5,294,021 - -1.0
5,294,034 + +0.6
5,294,042 - +1.7
5,294,089 + -0.2
5,294,089 + +0.1
5,294,089 + +1.4
5,294,127 + +0.5
5,294,184 + +0.6
5,294,256 + BT4060 0.11 +1.1
5,294,256 + BT4060 0.11 +0.4
5,294,258 + BT4060 0.11 -0.9
5,294,258 + BT4060 0.11 -0.1
5,294,259 - BT4060 0.11 +0.4
5,294,267 + BT4060 0.12 +0.8
5,294,281 + BT4060 0.12 -0.1
5,294,348 + BT4060 0.16 -0.2
5,294,350 + BT4060 0.16 -1.0
5,294,379 - BT4060 0.18 -0.1
5,294,582 + BT4060 0.28 -0.4
5,294,583 - BT4060 0.28 +0.2
5,294,654 - BT4060 0.32 -0.4
5,294,705 + BT4060 0.34 +0.8
5,294,705 + BT4060 0.34 +0.6
5,294,706 - BT4060 0.34 -0.6
5,294,706 - BT4060 0.34 +1.0
5,294,706 - BT4060 0.34 +0.6
5,294,810 + BT4060 0.40 -3.3
5,294,810 + BT4060 0.40 -1.3
5,294,819 - BT4060 0.40 +0.8
5,294,819 - BT4060 0.40 -0.6
5,294,827 - BT4060 0.41 +2.2
5,294,895 + BT4060 0.44 +0.2
5,294,942 + BT4060 0.47 -0.4
5,294,942 + BT4060 0.47 +1.0
5,294,942 + BT4060 0.47 +0.0
5,294,973 - BT4060 0.48 -1.9
5,294,973 - BT4060 0.48 +1.5
5,295,003 - BT4060 0.50 +1.0
5,295,100 - BT4060 0.55 -1.5
5,295,113 + BT4060 0.56 -0.9
5,295,114 - BT4060 0.56 +0.8
5,295,117 + BT4060 0.56 -0.7
5,295,118 - BT4060 0.56 -0.5
5,295,118 - BT4060 0.56 +0.9
5,295,183 + BT4060 0.59 -1.7
5,295,191 + BT4060 0.60 -0.2
5,295,222 - BT4060 0.61 -2.3
5,295,222 - BT4060 0.61 +0.4
5,295,251 + BT4060 0.63 -0.7
5,295,379 + BT4060 0.69 -1.1
5,295,388 + BT4060 0.70 -2.0
5,295,414 + BT4060 0.71 -1.0
5,295,414 + BT4060 0.71 +1.3
5,295,478 + BT4060 0.74 -0.2
5,295,481 + BT4060 0.75 +1.0
5,295,532 + BT4060 0.77 -0.4
5,295,601 + BT4060 0.81 -2.8
5,295,604 + BT4060 0.81 -0.0
5,295,647 - BT4060 0.83 +0.0
5,295,647 - BT4060 0.83 -1.0
5,295,650 + BT4060 0.83 -0.4
5,295,651 - BT4060 0.83 +1.0
5,295,765 - BT4060 0.89 -0.2
5,295,767 - BT4060 0.89 -1.6
5,295,771 + BT4060 0.90 -1.2
5,295,772 - BT4060 0.90 +1.0
5,295,835 + +0.6
5,295,835 + +2.2
5,295,836 - -0.9
5,295,849 + -1.7
5,295,849 + +0.8
5,295,850 - +0.2
5,295,869 + -1.5
5,295,972 - -1.1
5,295,987 + -0.5
5,295,987 + -0.8
5,295,996 + -0.5
5,296,012 + -0.3
5,296,137 + BT4061 0.25 +1.2
5,296,137 + BT4061 0.25 -1.2
5,296,137 + BT4061 0.25 +0.4
5,296,137 + BT4061 0.25 -0.3
5,296,257 + BT4061 0.64 -1.7
5,296,401 + +1.1
5,296,442 + -0.9
5,296,442 + -1.1
5,296,449 + -0.1
5,296,452 + +0.1
5,296,540 + BT4062 0.15 -0.0
5,296,542 + BT4062 0.15 +0.2
5,296,548 + BT4062 0.17 -0.6
5,296,548 + BT4062 0.17 -1.2
5,296,592 + BT4062 0.25 +0.1
5,296,757 + BT4062 0.57 -0.1
5,296,761 + BT4062 0.58 -0.1
5,296,761 + BT4062 0.58 -1.6
5,296,774 + BT4062 0.61 -0.8
5,296,869 + BT4062 0.79 -0.4
5,296,928 - -0.4
5,296,949 + -1.2
5,296,949 + -0.3

Or see this region's nucleotide sequence